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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010539043.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 345aa MW: 38671.7 Da PI: 9.4949 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010539043.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 392.3 | 7.1e-120 | 1 | 345 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd g+re r+k+ +y+ a + l +++ +q+m++iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erdn+l+al+++e
XP_010539043.1 1 MDDGGHREngRHKAdQYKTAqsQWLTQHQpsMKQVMAIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAVMERDNALVALQYRE 95
9*****999*****9**9544344555542246************************************************************** PP
GAGA_bind 89 nsla.....salpvgvqvlsgtksidslqqlse........pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
s++ s++ +g+q+++g+k++++ qq+++ +q++++a++ re e ++alp++ + + e++k+k+++r+k+pk++++ kk
XP_010539043.1 96 SSMVttatmSSCTAGCQISHGVKHMHHPQQHHHmhhhhhhmTQMGENAYGSRELEPNDALPTSP-TGGTMESAKPKRGKRPKEPKTTTSAIKKG- 188
*9999999999*****************99888889999999*******************766.67777888899899999999887765554. PP
GAGA_bind 171 sekskkkvkkesader...........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
+k+++k kkes++ + sk+++k ++++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt
XP_010539043.1 189 -SKNQRKIKKESEELDldkimilktqhyqnndeeeagkhiglgSKSDWKGQEMGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTT 282
.666777777776644578**************************************************************************** PP
GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+S++PLP+ +++r+aR++grKmS+++f+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
XP_010539043.1 283 LSMHPLPALPNKRHARVGGRKMSGSVFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 345
**************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKTA QSQWLTQHQP SMKQVMAIIA ERDAAIQERN LAISEKKAAV 60
AERDMAFLQR DTAIAERNNA VMERDNALVA LQYRESSMVT TATMSSCTAG CQISHGVKHM 120
HHPQQHHHMH HHHHHMTQMG ENAYGSRELE PNDALPTSPT GGTMESAKPK RGKRPKEPKT 180
TTSAIKKGSK NQRKIKKESE ELDLDKIMIL KTQHYQNNDE EEAGKHIGLG SKSDWKGQEM 240
GLNQVVYDET TMPPPVCSCT GVLRQCYKWG NGGWQSSCCT TTLSMHPLPA LPNKRHARVG 300
GRKMSGSVFN KLLSRLAAEG HDLSNPVDLK DHWAKHGTNR YITIK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982321 | 1e-54 | FJ982321.1 Cardamine hirsuta GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | FJ982322 | 1e-54 | FJ982322.1 Cardamine hirsuta GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
