PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539066.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Protein Properties

Length: 223aa MW: 25408 Da PI: 9.6864

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.3	2.1e-16	127	215	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++s+v+ +l lp +f+++ k+ + +tl de+g+ +e + rk++ l++GW++F+ a++L +gD +vF+l++ ++f +v XP_010539066.1 127 FVKAMLQSHVSGCFWLGLPVHFCRSDLPKH--DCAMTLIDEEGEDYETVYLARKTG----LSGGWRGFAIAHNLVDGDALVFQLIHPTTF--KVY 213 89*******************8874333..347***********656665....***********************97777..666 PP EE CS B3 96 vf 97 + XP_010539066.1 214 IT 215 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.08E-23	120	218	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-19	122	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.07E-24	125	216	No hit	No description
Pfam	PF02362	6.0E-14	127	216	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-23	127	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.111	127	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MVVAKPSSYE EFRLKRLEEN KKRMDALNLP QLSLALRSTS PKSSPMKKSK PRTRQKQQVA 60 VRRSSRLSNV SSPVYKEVDV ERVQIPRRIF KGKDFSDQFY VSHEDRADAL AKAEKLQDEL 120 GDEYPSFVKA MLQSHVSGCF WLGLPVHFCR SDLPKHDCAM TLIDEEGEDY ETVYLARKTG 180 LSGGWRGFAI AHNLVDGDAL VFQLIHPTTF KVYITRVNGR GES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539066.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539066.1	1e-167	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	1e-89	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1R3I8Q8	1e-100	A0A1R3I8Q8_COCAP; Uncharacterized protein
STRING	XP_010539066.1	1e-166	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-82	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]