PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539180.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 251aa    MW: 27075.7 Da    PI: 10.2371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2681.8e-21113162255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     gy+GVr+++ +grW AeIrd    +  r r++lg+f+taeeAa+a++aa+++l+g
  XP_010539180.1 113 GYRGVRRRP-WGRWSAEIRD----KiGRCRHWLGTFDTAEEAARAYDAAARRLRG 162
                     8********.**********....3335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-31113179IPR001471AP2/ERF domain
PROSITE profilePS5103222.879113170IPR001471AP2/ERF domain
PfamPF008473.3E-15113162IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-22113170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-29114169IPR001471AP2/ERF domain
PRINTSPR003679.2E-11114125IPR001471AP2/ERF domain
PRINTSPR003679.2E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGDAVNDHRV QFSVPLLDIP SLSMPVHVTK PFHGPGSNKL GGDLEPDSVP DLRWVLDGTI  60
AAVVGEAVLF GKTTSTQGEN PRNIPGAGMT AAEDEKPDEA VMGVKRRRSG GGGYRGVRRR  120
PWGRWSAEIR DKIGRCRHWL GTFDTAEEAA RAYDAAARRL RGSKAKTNFY IPPFLPTAEA  180
EAASPGAKGR RSKKVMTEKR CQKVTSVAQL FSNATTITSS NNDNNVISRD NGGLELDLKL  240
GCGIHSAVII K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-171121691371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539180.10.0PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M54e-36ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH59e-54A0A078HPH5_BRANA; BnaC02g22960D protein
STRINGXP_010539180.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-24ERF family protein