PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539203.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 484aa    MW: 54594.6 Da    PI: 7.3892
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.79.9e-27287340256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     ++++WtpeLH++Fv aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  XP_010539203.1 287 KKVDWTPELHKKFVLAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKFRMH 340
                     689*****************.********************************96 PP
2Response_reg22.27.1e-093312118108
                     HHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
    Response_reg  18 lekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                     l++ +y +v++++d  eal  + ek   +++ ++ ++ ++  + +e+l+   ++ ++lp i+ ++    +++ +++ +Ga +fl Kp + ++l 
  XP_010539203.1  33 LQSMDY-IVTTFTDENEALSAFSEKPesFHIAIVEVNTSDkNKSFEFLE---AA-KDLPTIMTSRDHCLTTMMKCIALGAVEFLHKPLSDDKLN 121
                     67899*.***************888877******999998566666665...33.4799999999999*********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-1216131IPR011006CheY-like superfamily
PROSITE profilePS5011011.57216128IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.6E-1319135No hitNo description
CDDcd001561.93E-733128No hitNo description
PROSITE profilePS5129414.338283342IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-26285342IPR009057Homeodomain-like
SuperFamilySSF466899.86E-18286343IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-24287340IPR006447Myb domain, plants
PfamPF002499.4E-7289337IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVCTEHDLSN WENFPKGLRV LLLDAEADAA SKLQSMDYIV TTFTDENEAL SAFSEKPESF  60
HIAIVEVNTS DKNKSFEFLE AAKDLPTIMT SRDHCLTTMM KCIALGAVEF LHKPLSDDKL  120
NNIWQHVLHK AFNDRGSRVS GSLKPVKESV VSTLYLEGED PRGKDSNADE RDPAPSTPQL  180
KQGSRLLDDK DRPENDGNCS MENVNYSSEK ESREVESKSV ETTDANHAVV KEERDEGEGE  240
TDEARSGNKA RVDRRKNKKE DGVKDRCKPS NKPSGIKNVA GNKANRKKVD WTPELHKKFV  300
LAVEQLGVDQ AIPSRILELM KVEGLTRHNV ASHLQKFRMH RRNILPKGNH HHDRRWIHGH  360
HHRHGQMQRS PVMAYPVAPM FPVWGTPPPP AMWPPPSSGY PLPWQPPSSC WHWKPPFPPA  420
HGNAWGCPIG PPAIRPPCNN TSQEEEEEID KVVKEAMSKP WLVFKFHFGK PSGPHRGFSM  480
LSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16286340155Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057904.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA431e-174APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLM4D8131e-171M4D813_BRARP; Uncharacterized protein
STRINGXP_010539203.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-148ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]