PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539323.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 569aa    MW: 61917.4 Da    PI: 7.2321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32214271260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_010539323.1 214 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 271
                     8****************************************.***************85 PP
2WRKY107.18.7e-34386444159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010539323.1 386 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 444
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.858208272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-27210272IPR003657WRKY domain
SuperFamilySSF1182904.05E-25211272IPR003657WRKY domain
SMARTSM007743.2E-34213271IPR003657WRKY domain
PfamPF031061.3E-24214270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37371446IPR003657WRKY domain
SuperFamilySSF1182901.7E-29378446IPR003657WRKY domain
PROSITE profilePS5081138.629381446IPR003657WRKY domain
SMARTSM007743.1E-39386445IPR003657WRKY domain
PfamPF031064.6E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEPENFAGKV FRSAAGDPET RQRATDATTG GGGGGGGARY KLMSPAKLPI SRSTCITIPP  60
GLSPTSFLES PVLLSNIKAE PSPTTGSLFK PQPVHGSVSS SCYPGRTVHL NTFEEKKSSE  120
FEFRPAPVSN MVSAELEKQR SEPPAQFRGR GHSLSQIPSL ISEAVASSSE LTRPIPPLQT  180
IAIGSDIPAG SDVDESSQAS QNDQKGSAPS VLADDGYNWR KYGQKHVKGS EFPRSYYKCT  240
HPNCEVKKLF ERSHDGQITE IVYKGTHDHP KPQPTRRNSG GLLMSAQEER LDKFSSLTGR  300
DEKGSSMYNN GSQPFEQNGN SEVSPVSASE EGGEVAVSNR NNDDLDDDDP FSKRRRMDGC  360
MEITPLVKPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTAPGCPVR  420
KHVERASHDP KAVITTYEGK HNHDVPTARS NNHDMSAGQP RFRHEEADTI SLDLGVGIAS  480
GPDHTSNEHQ TQQIHPVFVH QTHSNGAAGF RFVHATPMAS YYAAALNGNV NQYGPRDTNP  540
GEAQTGEISS LNHSSHPCPQ SIGRIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38212446877Probable WRKY transcription factor 4
2lex_A8e-38212446877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539323.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123931e-103EU912393.1 Brassica napus WRKY20-1 transcription factor (WRKY20-1) mRNA, complete cds.
GenBankKC2465701e-103KC246570.1 Brassica napus WRKY transcription factor 20.1 (WRKY20.1) mRNA, complete cds.
GenBankKC2465711e-103KC246571.1 Brassica napus WRKY transcription factor 20.2 (WRKY20.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539323.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GYJ60.0R0GYJ6_9BRAS; Uncharacterized protein
STRINGXP_010539323.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein