PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539579.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 154aa MW: 16700.1 Da PI: 8.6035

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.6	5.8e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkC+kdC++apyfpae+++kf vhk+FGasnv+k+l++lpe++r+da+s+++yeA+ar+rdPvyG+vg i++lq+q+++l+a+la XP_010539579.1 8 PCAGCKLLRRKCVKDCIFAPYFPAEESQKFLTVHKIFGASNVTKMLQELPESQRTDAVSAMAYEANARVRDPVYGCVGAISSLQSQVDSLQAQLA 102 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_010539579.1 103 LAQAE 107 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.097	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MKERGKGPCA GCKLLRRKCV KDCIFAPYFP AEESQKFLTV HKIFGASNVT KMLQELPESQ 60 RTDAVSAMAY EANARVRDPV YGCVGAISSL QSQVDSLQAQ LALAQAELLQ FRLLHHHRPP 120 PPSSVAAVNS PTSKHLSAVN LSCDGGAGDS LWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	8	111	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	8	111	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539579.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539579.1	1e-112	PREDICTED: LOB domain-containing protein 3-like
Swissprot	Q9SA51	3e-62	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A0S3SK41	2e-62	A0A0S3SK41_PHAAN; Uncharacterized protein
STRING	XP_010539579.1	1e-111	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-45	LOB domain-containing protein 4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]