PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539871.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 377aa MW: 41027.6 Da PI: 7.1014

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.2	3.5e-67	129	304	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...................aeaaskrkre 77 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerq+qlaa+++++++ + XP_010539871.1 129 RQGGMNCQDCGNQAKKDCGHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQAQLAALQQQQQQGGgcsrgdnvkrlrepssdggN--------- 214 7899***************************************************99988877677866666665555555442......... PP DUF702 78 l..............kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s +l+ t++++a+s+ l + ++P+ev+s+avfrc+rvss+d+geee+aYqtav+igGhvfkGiLydqG+++ XP_010539871.1 215 GddgdddkeldlvggGSGGGGSLAVTRVVNASSS-GLAVGHFPPEVNSPAVFRCIRVSSIDEGEEEYAYQTAVNIGGHVFKGILYDQGPDH 304 0444455555778777788899999999999765.888999**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.2E-65	132	303	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.3E-27	134	176	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.1E-28	254	302	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAGFFYLGGG RDRNNNRQDH NHHQEKDQED KSNYLYLYKD EIYNPNNNNI NSNKGFEIWP 60 PQYFQEQQQQ HQQQQHISPA NFYSFGMVPS GSSSSNNNSN SNNNRCRNFY FNVVSDESLR 120 SSAGFTVTRQ GGMNCQDCGN QAKKDCGHMR CRTCCKSRGF QCSTHVKSTW VPAAKRRERQ 180 AQLAALQQQQ QQGGGCSRGD NVKRLREPSS DGGNGDDGDD DKELDLVGGG SGGGGSLAVT 240 RVVNASSSGL AVGHFPPEVN SPAVFRCIRV SSIDEGEEEY AYQTAVNIGG HVFKGILYDQ 300 GPDHSHNRYS SSPNAAAADS SQHLNLLALT ATATANAVPT GVTAGNNNAS LLDPSSLYPA 360 PLNAFITSTP FFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAGFFYLGGG RDRNNNRQDH NHHQEKDQED KSNYLYLYKD EIYNPNNNNI NSNKGFEIWP  60
PQYFQEQQQQ HQQQQHISPA NFYSFGMVPS GSSSSNNNSN SNNNRCRNFY FNVVSDESLR  120
SSAGFTVTRQ GGMNCQDCGN QAKKDCGHMR CRTCCKSRGF QCSTHVKSTW VPAAKRRERQ  180
AQLAALQQQQ QQGGGCSRGD NVKRLREPSS DGGNGDDGDD DKELDLVGGG SGGGGSLAVT  240
RVVNASSSGL AVGHFPPEVN SPAVFRCIRV SSIDEGEEEY AYQTAVNIGG HVFKGILYDQ  300
GPDHSHNRYS SSPNAAAADS SQHLNLLALT ATATANAVPT GVTAGNNNAS LLDPSSLYPA  360
PLNAFITSTP FFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539871.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539871.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-140	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	1e-138	A0A178W9B5_ARATH; SRS5
STRING	XP_010539871.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-111	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]