PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539974.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 380aa MW: 43000.5 Da PI: 6.8249

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.5	8.2e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+ELS+LCd+++ +++fs+tgk XP_010539974.1 9 KRLESTSNRQVTYSKRRSGILKKAKELSILCDIDIVLLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.4E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.553	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-27	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-21	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRSGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE 60 HSGIEDVIAK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNINEFLGAR NKTAEVLSNQ 120 VAVLQAQITE IHRRLSCWGN IDRIENVEHL GQLEESLRNS VEKIQIHREN SRKNQLIPVG 180 CTSQFHCGIS LPLAMGGVQE AHSLSWLHDD DNQQIIIPGD PSFLLHRDMR STSTVPSLAV 240 YSGFFEHGKP EDQICNPGQF DNLGPEPSTL NELNRNGCLS LQFGEEYSYG NPFGSMSMQD 300 DDKKLDQGIE LNLQQDPSMY QSNTSFQFPH QPMGTSDHHH HNTWFPDSAC CSTSGFGQTS 360 YNQVRIQLLQ NYYLNILSCS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRSGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE  60
HSGIEDVIAK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNINEFLGAR NKTAEVLSNQ  120
VAVLQAQITE IHRRLSCWGN IDRIENVEHL GQLEESLRNS VEKIQIHREN SRKNQLIPVG  180
CTSQFHCGIS LPLAMGGVQE AHSLSWLHDD DNQQIIIPGD PSFLLHRDMR STSTVPSLAV  240
YSGFFEHGKP EDQICNPGQF DNLGPEPSTL NELNRNGCLS LQFGEEYSYG NPFGSMSMQD  300
DDKKLDQGIE LNLQQDPSMY QSNTSFQFPH QPMGTSDHHH HNTWFPDSAC CSTSGFGQTS  360
YNQVRIQLLQ NYYLNILSCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-15	1	96	1	94	MEF2C
5f28_B	6e-15	1	96	1	94	MEF2C
5f28_C	6e-15	1	96	1	94	MEF2C
5f28_D	6e-15	1	96	1	94	MEF2C
6byy_A	5e-15	1	92	1	90	MEF2 CHIMERA
6byy_B	5e-15	1	92	1	90	MEF2 CHIMERA
6byy_C	5e-15	1	92	1	90	MEF2 CHIMERA
6byy_D	5e-15	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539974.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539974.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-154	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	V4KY08	1e-155	V4KY08_EUTSA; Uncharacterized protein
STRING	XP_010539972.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-157	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]