PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540188.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 217aa MW: 24513.9 Da PI: 9.1655

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.8	1.8e-38	27	125	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+k+C lap+fp++++ +f n+hklFG+sn++k++k+++e++r am+ l+ eA++rardPv G ++v+++lqqq+e++ka+l+ XP_010540188.1 27 ACAACKYQRKKCSKNCLLAPHFPHDRQTQFINAHKLFGVSNITKMIKNMEESQRVLAMNNLILEADMRARDPVGGIYRVVHNLQQQIESTKADLD 121 7********************************************************************************************99 PP DUF260 96 llke 99 l+ + XP_010540188.1 122 LVLQ 125 8866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.321	26	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-36	27	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MPSAANSGGS TPVSTVTSSG NTSTSPACAA CKYQRKKCSK NCLLAPHFPH DRQTQFINAH 60 KLFGVSNITK MIKNMEESQR VLAMNNLILE ADMRARDPVG GIYRVVHNLQ QQIESTKADL 120 DLVLQHLALF RGRPQETKEI YHGYGNLTEQ QWHVLNDQNM QDQYMQQGFV MECTYDHYDN 180 NEKKKPVVKV SSDEIRKQKG IAKRKSDMGL NQLLISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-23	28	131	12	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-23	28	131	12	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540188.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540188.1	1e-165	PREDICTED: LOB domain-containing protein 22
TrEMBL	B9SN30	3e-46	B9SN30_RICCO; LOB domain-containing protein, putative
TrEMBL	R0GEJ3	6e-47	R0GEJ3_9BRAS; Uncharacterized protein
STRING	XP_010540188.1	1e-165	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-44	LOB domain-containing protein 22