PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540239.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 286aa    MW: 31917.2 Da    PI: 8.0439
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314e-41144221178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+egC+adls+ak+yhrrhkvC++hska++vl++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++
  XP_010540239.1 144 RCQAEGCNADLSQAKHYHRRHKVCDFHSKASTVLTAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSNQ 221
                     6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.4E-34140206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.231142219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-38143221IPR004333Transcription factor, SBP-box
PfamPF031108.1E-31145218IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMLEYDWGNP SAMVFSAPDD DDDDAHHPDS TRPIPMFDPT HHSMLSPPPP PLINNQQFLY  60
PAANQFHHAM YDPPASYGQP GTGLYQVADH DRGTGPYMVD MTTSRIGLNL GGRTYFSAAD  120
DDFVSRLYRR SSRPGESCLS NTPRCQAEGC NADLSQAKHY HRRHKVCDFH SKASTVLTAG  180
LTQRFCQQCS RFHLLSEFDN GKRSCRKRLA DHNRRRRKSN QAHESPKPPP EINATPRSSN  240
DSGTQSSSSQ TVPLSPPTIS LDCFRQRQYQ ATASSSSSNS MFFSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-311452181184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540239.10.0PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ8GXL34e-86SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A078HML51e-91A0A078HML5_BRANA; BnaCnng09040D protein
TrEMBLA0A3P6GTE11e-91A0A3P6GTE1_BRAOL; Uncharacterized protein
STRINGXP_010540239.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70102743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-79squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]