PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540284.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 544aa    MW: 61820.4 Da    PI: 5.901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000553724091355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+r N++f  L +++P+ +        +K +iL  +++Y+++L+
  XP_010540284.1 372 RRRENEKFRLLGSMVPTvD------EIDKESILNNTIKYLCELE 409
                     6777*************55......8**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5114200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.988359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071362414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-7372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00115372413No hitNo description
Gene3DG3DSA:4.10.280.102.0E-6373419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGEGTAEAER NRILRKQLAV AVRSVQWSYA IFWCSSPTQH GALEWGEGYY NGDIKRRKKS  60
SDEEMGDEFK AECRYGLQRS KQLRQLYLFM LEGDATTITY DDNTVLSSDD LTDEEWYYLV  120
CMSYVFSLGQ GLPGTSLATG ETIWLCNAQY AESKLFTRSL LARSASIQTV VCFPFSGGVI  180
ELGVTDLIAE DHNLLQHVKA CLLDTSKPNC IAEDFSVTQN SNSDDEHNQM GFRISQGNSM  240
LEENFQELRE GNRQNVLGCA DLGSAAEDIH YRRTVSSVLS YAASRRKKAH HHHHPSNLDS  300
SDSGSSFFPW KQRGTSNVKR QRQPQHPQSV LRKILYDVPS MHTANMQRMF ERETFGHQNQ  360
EIQLEHGDSS DRRRENEKFR LLGSMVPTVD EIDKESILNN TIKYLCELEA RVEELESCMG  420
SVNFVEIQRK MNLDPSALIE ETSDNYESTK IDVNTAETER IGGRDVRVKL KGAEVVIEIR  480
CAYREYIVAD IMEAISNLHM DAFSVRSNTL NGFLVLNLKA KFRRNAVASV GMIKRELRRV  540
AGEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-14141999189Transcription factor MYC3
4rqw_B3e-14141999189Transcription factor MYC3
4rs9_A3e-14141999189Transcription factor MYC3
4yz6_A3e-14141999189Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540284.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540284.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087GL750.0A0A087GL75_ARAAL; Uncharacterized protein
STRINGXP_010540284.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein