PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540319.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 407aa MW: 45875.1 Da PI: 5.9596

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.3e-31	267	322	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH++F++a+++LGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_010540319.1 267 KQRRCWSPDLHRSFLNALQELGGPQVATPKQIRELMQVEGLTNDEVKSHLQKYRLH 322 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-27	264	325	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.94E-16	264	325	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.334	264	324	IPR017930	Myb domain
TIGRFAMs	TIGR01557	9.4E-27	267	322	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	269	320	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGSLGDELSL DLRPSFQPRT ISDFLKEVSA IGDVSERVSK LEDFVKEFEG EMKKIDGFKR 60 ELPLCMLLLN DAISFLKEET KKFSARNVGP VLEEFIPLKK RNREEEQDKD DEETEDEEEK 120 GNSTKWIKRD KETREKTNWV SSFQLWKPDY YTSNPVNRKY SDHRITCRVE SKQRNEENLT 180 NGSSSRPFLP CKGFESFSSR NGEEEISSAQ RLSLLSPAMK NGKEETGSSL GLVASLSLPS 240 SAPEVNLNAQ SVIRLPPPSL SQQTSRKQRR CWSPDLHRSF LNALQELGGP QVATPKQIRE 300 LMQVEGLTND EVKSHLQKYR LHARKLHPGN SNSSETLEKQ SVVVLGGKLW NSGENSKGSS 360 PESGSPQGPL LLAMTTTTGG DSMEEDEETK SESFSWRDHH DSKHAKA

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGSLGDELSL DLRPSFQPRT ISDFLKEVSA IGDVSERVSK LEDFVKEFEG EMKKIDGFKR  60
ELPLCMLLLN DAISFLKEET KKFSARNVGP VLEEFIPLKK RNREEEQDKD DEETEDEEEK  120
GNSTKWIKRD KETREKTNWV SSFQLWKPDY YTSNPVNRKY SDHRITCRVE SKQRNEENLT  180
NGSSSRPFLP CKGFESFSSR NGEEEISSAQ RLSLLSPAMK NGKEETGSSL GLVASLSLPS  240
SAPEVNLNAQ SVIRLPPPSL SQQTSRKQRR CWSPDLHRSF LNALQELGGP QVATPKQIRE  300
LMQVEGLTND EVKSHLQKYR LHARKLHPGN SNSSETLEKQ SVVVLGGKLW NSGENSKGSS  360
PESGSPQGPL LLAMTTTTGG DSMEEDEETK SESFSWRDHH DSKHAKA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540319.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540319.1	0.0	PREDICTED: myb family transcription factor EFM isoform X1
TrEMBL	A0A2C9U6J1	1e-112	A0A2C9U6J1_MANES; Uncharacterized protein
STRING	XP_010540319.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13927	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-49	G2-like family protein