PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540321.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 374aa MW: 41887.7 Da PI: 5.2953

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	234	289	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH++F++a+++LGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_010540321.1 234 KQRRCWSPDLHRSFLNALQELGGPQVATPKQIRELMQVEGLTNDEVKSHLQKYRLH 289 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-27	231	292	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.334	231	291	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-16	231	292	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-27	234	289	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-7	236	287	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGSLGDELSL DLRPSFQPRT ISDFLKEVSA IGDVSERVSK LEDFVKEFEG EMKKIDGFKR 60 ELPLCMLLLN DAISFLKEET KKFSARNVGP VLEEFIPLKK RNREEEQDKD DEETEDEEEK 120 GNSTKWIKRD KETREKTNWQ RNEENLTNGS SSRPFLPCKG FESFSSRNGE EEISSAQRLS 180 LLSPAMKNGK EETGSSLGLV ASLSLPSSAP EVNLNAQSVI RLPPPSLSQQ TSRKQRRCWS 240 PDLHRSFLNA LQELGGPQVA TPKQIRELMQ VEGLTNDEVK SHLQKYRLHA RKLHPGNSNS 300 SETLEKQSVV VLGGKLWNSG ENSKGSSPES GSPQGPLLLA MTTTTGGDSM EEDEETKSES 360 FSWRDHHDSK HAKA

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGSLGDELSL DLRPSFQPRT ISDFLKEVSA IGDVSERVSK LEDFVKEFEG EMKKIDGFKR  60
ELPLCMLLLN DAISFLKEET KKFSARNVGP VLEEFIPLKK RNREEEQDKD DEETEDEEEK  120
GNSTKWIKRD KETREKTNWQ RNEENLTNGS SSRPFLPCKG FESFSSRNGE EEISSAQRLS  180
LLSPAMKNGK EETGSSLGLV ASLSLPSSAP EVNLNAQSVI RLPPPSLSQQ TSRKQRRCWS  240
PDLHRSFLNA LQELGGPQVA TPKQIRELMQ VEGLTNDEVK SHLQKYRLHA RKLHPGNSNS  300
SETLEKQSVV VLGGKLWNSG ENSKGSSPES GSPQGPLLLA MTTTTGGDSM EEDEETKSES  360
FSWRDHHDSK HAKA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540321.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540321.1	0.0	PREDICTED: myb family transcription factor EFM isoform X3
TrEMBL	A0A2C9U6J1	1e-108	A0A2C9U6J1_MANES; Uncharacterized protein
STRING	XP_010540319.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	2e-47	G2-like family protein