PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540345.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 452aa MW: 50312.6 Da PI: 6.5656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.5e-05	350	388	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010540345.1 350 RKEKLGDRISALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 388 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.63	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-5	348	392	No hit	No description
SuperFamily	SSF47459	6.02E-11	348	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-9	352	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MESANFHQHH EDHHLELDGS SSSSSSLDNS STDPSCYGAS TASHDQWRPA GGVSLVDLSK 60 NYSNEMINTK DHNNGSECMS FSHIHNHPFL QQDLSLQWHH NQSSYDDDDD DHHHHQDHHN 120 NHHTLSKIKK ELSSSSDQIQ ADNIPTFTDM IGTPLATTKY LRINEHNEDF NDMPEKLLLK 180 TVSSGFPISG EYYNYSYNSP SSSSSSSSSS SSHRGSFSQI YPSVNISSLS QSPRMNMMNM 240 NIPRPYDMNM HVLDGRLFSG SGLVNNGNQS EISLEIMGRG SLPFGLGDHH LQQTIQPTCT 300 PTDQMHLFSN DPHASEGKRN DLLMATKGRE NAPKKPRVEP RSPCPPLKVR KEKLGDRISA 360 LQQLVSPFGK TDTASVLMEA IGYIKFLQNQ IETLSVPYMR ASRNREGKSS QGVIMKNGSV 420 SHERSEEPKM NLRSLGLCLV PLSCMSYVTG EG

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MESANFHQHH EDHHLELDGS SSSSSSLDNS STDPSCYGAS TASHDQWRPA GGVSLVDLSK  60
NYSNEMINTK DHNNGSECMS FSHIHNHPFL QQDLSLQWHH NQSSYDDDDD DHHHHQDHHN  120
NHHTLSKIKK ELSSSSDQIQ ADNIPTFTDM IGTPLATTKY LRINEHNEDF NDMPEKLLLK  180
TVSSGFPISG EYYNYSYNSP SSSSSSSSSS SSHRGSFSQI YPSVNISSLS QSPRMNMMNM  240
NIPRPYDMNM HVLDGRLFSG SGLVNNGNQS EISLEIMGRG SLPFGLGDHH LQQTIQPTCT  300
PTDQMHLFSN DPHASEGKRN DLLMATKGRE NAPKKPRVEP RSPCPPLKVR KEKLGDRISA  360
LQQLVSPFGK TDTASVLMEA IGYIKFLQNQ IETLSVPYMR ASRNREGKSS QGVIMKNGSV  420
SHERSEEPKM NLRSLGLCLV PLSCMSYVTG EG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540345.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540345.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X2
Swissprot	Q9SFZ3	1e-150	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A087H219	1e-157	A0A087H219_ARAAL; Uncharacterized protein
STRING	XP_010540345.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-129	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]