PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540346.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 451aa MW: 50209.4 Da PI: 6.5656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	7e-05	352	392	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010540346.1 352 QVRKEKLGDRISALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 392 56788999*********98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.42	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-4	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-11	350	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.77E-5	354	396	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-8	356	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MESANFHQHH EDHHLELDGS SSSSSSLDNS STDPSCYGAS TASHDQWRPA GGVSLVDLSK 60 NYSNEMINTK DHNNGSECMS FSHIHNHPFL QQDLSLQWHH NQSSYDDDDD DHHHHQDHHN 120 NHHTLSKIKK ELSSSSDQIQ ADNIPTFTDM IGTPLATTKY LRINEHNEDF NDMPEKLLLK 180 TVSSGFPISG EYYNYSYNSP SSSSSSSSSS SSHRGSFSQI YPSVNISSLS QSPRMNMMNM 240 NIPRPYDMNM HVLDGRLFSG SGLVNNGNQS EISLEIMGRG SLPFGLGDHH LQQTIQPTCT 300 PTDQMHLFSN DPHASEGKRN DLLMATKGRE NAPKKPRVEP RSPCPPLKLI KQVRKEKLGD 360 RISALQQLVS PFGKTDTASV LMEAIGYIKF LQNQIETLSV PYMRASRNRE GKSSQGGSVS 420 HERSEEPKMN LRSLGLCLVP LSCMSYVTGE G

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MESANFHQHH EDHHLELDGS SSSSSSLDNS STDPSCYGAS TASHDQWRPA GGVSLVDLSK  60
NYSNEMINTK DHNNGSECMS FSHIHNHPFL QQDLSLQWHH NQSSYDDDDD DHHHHQDHHN  120
NHHTLSKIKK ELSSSSDQIQ ADNIPTFTDM IGTPLATTKY LRINEHNEDF NDMPEKLLLK  180
TVSSGFPISG EYYNYSYNSP SSSSSSSSSS SSHRGSFSQI YPSVNISSLS QSPRMNMMNM  240
NIPRPYDMNM HVLDGRLFSG SGLVNNGNQS EISLEIMGRG SLPFGLGDHH LQQTIQPTCT  300
PTDQMHLFSN DPHASEGKRN DLLMATKGRE NAPKKPRVEP RSPCPPLKLI KQVRKEKLGD  360
RISALQQLVS PFGKTDTASV LMEAIGYIKF LQNQIETLSV PYMRASRNRE GKSSQGGSVS  420
HERSEEPKMN LRSLGLCLVP LSCMSYVTGE G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540346.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019058167.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X1
Swissprot	Q9SFZ3	1e-149	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A087H219	1e-158	A0A087H219_ARAAL; Uncharacterized protein
STRING	XP_010540345.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-128	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]