PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540348.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 323aa MW: 35764.9 Da PI: 8.8985

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.4e-05	219	259	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010540348.1 219 QVRKEKLGDRISALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 259 56788999*********98.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.42	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-4	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-11	217	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.07E-5	221	263	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-9	223	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MELPLLLMIN GVLLVVFLCT PLATTKYLRI NEHNEDFNDM PEKLLLKTVS SGFPISGEYY 60 NYSYNSPSSS SSSSSSSSSH RGSFSQIYPS VNISSLSQSP RMNMMNMNIP RPYDMNMHVL 120 DGRLFSGSGL VNNGNQSEIS LEIMGRGSLP FGLGDHHLQQ TIQPTCTPTD QMHLFSNDPH 180 ASEGKRNDLL MATKGRENAP KKPRVEPRSP CPPLKLIKQV RKEKLGDRIS ALQQLVSPFG 240 KTDTASVLME AIGYIKFLQN QIETLSVPYM RASRNREGKS SQGVIMKNGS VSHERSEEPK 300 MNLRSLGLCL VPLSCMSYVT GEG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540348.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540348.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X4
Swissprot	Q9SFZ3	1e-112	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A087H219	1e-115	A0A087H219_ARAAL; Uncharacterized protein
STRING	XP_010540345.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-107	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]