PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540407.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YC
Protein Properties Length: 134aa    MW: 15066.3 Da    PI: 10.1019
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.62.5e-17393897
           NF-YC  8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                    +++e++++  + e+P  r+kki+k d+d++++ +ea  l+s a elf+  lt +s   a e kr+t++   + +av+r   + dfl+d  p
  XP_010540407.1  3 EEVEEKAEAIRPEFPTGRVKKIMKLDKDINKVNSEALFLVSCAAELFLRFLTEKSAEVAAERKRKTVNLDHLRTAVKRHRpTSDFLLDSLP 93
                    568888899999****************************************************************9975389*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.4E-22879IPR009072Histone-fold
SuperFamilySSF471131.44E-1810102IPR009072Histone-fold
PfamPF008082.4E-201578IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MTEEVEEKAE AIRPEFPTGR VKKIMKLDKD INKVNSEALF LVSCAAELFL RFLTEKSAEV  60
AAERKRKTVN LDHLRTAVKR HRPTSDFLLD SLPVPAQTVN RVARSVTAAD KPAPAGARRI  120
NDFFRKAETE TESS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540407.19e-92PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A0D2PU792e-59A0A0D2PU79_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JXK12e-59A0A1U8JXK1_GOSHI; DNA polymerase epsilon subunit C-like
TrEMBLA0A2P5SJG32e-59A0A2P5SJG3_GOSBA; Uncharacterized protein
STRINGXP_010540407.13e-91(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-58nuclear factor Y, subunit C13