PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540431.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 198aa    MW: 22239.3 Da    PI: 6.1619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-2185133355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+taeeAa a+++a+ +++g
  XP_010540431.1  85 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAASAYDKAAFRFRG 133
                     9*******.**********9...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1484133IPR001471AP2/ERF domain
SMARTSM003803.8E-3884147IPR001471AP2/ERF domain
CDDcd000181.91E-3584142No hitNo description
SuperFamilySSF541714.77E-2384142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3384142IPR001471AP2/ERF domain
PROSITE profilePS5103225.09384141IPR001471AP2/ERF domain
PRINTSPR003673.3E-128596IPR001471AP2/ERF domain
PRINTSPR003673.3E-12107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHGKRPLSRE ESDQGKGSEQ VKHNDDLCSI SCSSTLSESD VSALVSELSQ AIQTNDQSVS  60
VPYPYPFVIP EHGREEDHIQ IQRNYRGVRQ RPWGKWAAEI RDPNKAARVW LGTFDTAEEA  120
ASAYDKAAFR FRGNRAKLNF PERIDHQTTA GEENPSDHSS SSSLVVTNID NVVGPTIMAS  180
SFSDEYYEKD VNGHKRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2783144163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2783145467ATERF1
3gcc_A2e-2783145467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540431.11e-148PREDICTED: ethylene-responsive transcription factor ERF112
SwissprotP930077e-46EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLV4MA186e-48V4MA18_EUTSA; Uncharacterized protein
STRINGXP_010540431.11e-147(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-30ERF family protein