PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540467.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 1612aa MW: 182445 Da PI: 5.0719

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.5e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r+e+++klgL++rq ++WF+ rR k+kk XP_010540467.1 31 PKRQMKTPFQLETLEKVYAVEPYPSEATRAEMSEKLGLSDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-18	13	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-16	23	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	27	87	IPR001356	Homeobox domain
SMART	SM00389	8.8E-19	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	3.62E-15	32	86	No hit	No description
SMART	SM00571	2.2E-22	517	576	IPR018501	DDT domain
PROSITE profile	PS50827	16.346	517	576	IPR018501	DDT domain
Pfam	PF02791	1.4E-16	518	573	IPR018501	DDT domain
Pfam	PF05066	1.1E-16	699	766	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-6	894	934	IPR028942	WHIM1 domain
Pfam	PF15613	1.1E-12	1055	1127	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1612 aa Download sequence Send to blast
MEIGSDGVDQ ITSGGNGKKK IDNSNDGLSK PKRQMKTPFQ LETLEKVYAV EPYPSEATRA 60 EMSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAAVQ PPVNELPVRS VPEPESGSGS 120 GYSPYSNSGK NFASGSSSSR AGSGDYGPIG RRNHEARISV VERRAIACVE AQLGEPLRED 180 GPILGMEFDP LPPDAFGTPI EMQKRSVHPY ESKMYEPQDA RSCRSQAASH SIHEQPSKDD 240 PSSFIPEVYG RYSEIRAHGM EYDNTLARSS SFLQGNGHLP TSRGIHGNVA RNRSTSRQTV 300 RSPFISSVID DENVMLEKYP FDLEREDPYS DVHRKGKVDE VRLARESEAR DSCARKEIQR 360 RKNEEHMSKE IERHERERRK EEERLIRERL REEERSQREQ KREMERRAKF LQKELERVEK 420 KRQKEELRRE KESMRHKIAI EKATARRIAK ESMDLIEDEQ LELMELAAAS NGLPSILQLD 480 HDTLENLELF RDSLSSFPPK SVQLKRPFSI SPWKDSEENV GNLLMVWRFL IAFADVLGLW 540 PFTLGEFIQA FHDYDSRLLG EIHVALLSSI IRDIEDVART PFTGSGIIQY TVANPEGGHP 600 QLVEGAYAWG FDIHSWQKRL SPLTWPEILR QLALSAGFGP WLKKKGSWLS FLGDKDEVKA 660 CEDIISTIRS GSAAENAFAL MREKGLLLPR KSRHRLTPGT VKFAAFHILS LEGSKGLTVL 720 ELAEKIQESG LRDLTTSKTP EASISVALTR DIKLFERIAP STYCVRAPYR KDPVDAEAIL 780 IEARKKIRAF ENGSTGVEDV ERDEGSEGVA DEDPEVDDIS VTPANASKNA DDLGEENVLS 840 ANGKDDMICG VKADIKNGIK KDLSCLPSSS VKNDVVQTCL DNKNVEVEIN QAHSWIQGLT 900 EGDYCHLSVE ERLDALVALI GIANEGNSIR AVLEERMEAA NSLKKQMWAE AQLDKNCMRD 960 IMKLDFEYSK TEPRMPQHII QIPANERNNI NIEPTQSTDE QKPLEMVSND RTFVTQNTDM 1020 GHDNFASQHG YASKRSRSQL KSYIGQRSEE IYVYRSLPLG QDRRHNRYWQ FAASSSRNDP 1080 CSGLIFVELH DGKWRLIDTE EAFEALVTSL DMRGIRESHL RIMLLKIEGS FKENVHYNFQ 1140 LARNHCLKEK GVENEAAEMN SSPDSSADFD SPSSALLCGS NSDSVETSNS FRVELGRNDT 1200 EKKNLLQRYQ DFQGWMWSES FKSLLPFARK HGKKRCDQLL EHGAERMLWD STGTGLVESP 1260 LPVGVSLLKA LLVFLEASIP DEALESFWTE EEREKWVLEL NASSSPEDLI QVVTLLENAI 1320 KEEYLSSDIV TAKELLGAAS GDQGSVSVLP WIPQTVSAVA LRISELDASI QYIKHEKPDI 1380 TLADEDEEIR LPSGNSPFKS KTIKFLDDRD EAMREEVFMG KRNSKRGRAN CDPGSSRKVK 1440 RKKRRVGPNR STIVGRNAES MPLRLAQEGA EINSHQTGGR GRRTVRRRPE RRIIDDRVAD 1500 IVMPRNEEEE EEEEATQREM EEEWVIKEDE NAHHPVDYSR RDWGSDGNSN PNEASVEEKE 1560 RDEEYEGIGP SAMALEEEEE EAETSESSDE NGVPNKTWEE FGIESEDYSS DS

Sequence ? help Back to Top

Protein Sequence Length: 1612 aa Download sequence Send to blast

MEIGSDGVDQ ITSGGNGKKK IDNSNDGLSK PKRQMKTPFQ LETLEKVYAV EPYPSEATRA  60
EMSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAAVQ PPVNELPVRS VPEPESGSGS  120
GYSPYSNSGK NFASGSSSSR AGSGDYGPIG RRNHEARISV VERRAIACVE AQLGEPLRED  180
GPILGMEFDP LPPDAFGTPI EMQKRSVHPY ESKMYEPQDA RSCRSQAASH SIHEQPSKDD  240
PSSFIPEVYG RYSEIRAHGM EYDNTLARSS SFLQGNGHLP TSRGIHGNVA RNRSTSRQTV  300
RSPFISSVID DENVMLEKYP FDLEREDPYS DVHRKGKVDE VRLARESEAR DSCARKEIQR  360
RKNEEHMSKE IERHERERRK EEERLIRERL REEERSQREQ KREMERRAKF LQKELERVEK  420
KRQKEELRRE KESMRHKIAI EKATARRIAK ESMDLIEDEQ LELMELAAAS NGLPSILQLD  480
HDTLENLELF RDSLSSFPPK SVQLKRPFSI SPWKDSEENV GNLLMVWRFL IAFADVLGLW  540
PFTLGEFIQA FHDYDSRLLG EIHVALLSSI IRDIEDVART PFTGSGIIQY TVANPEGGHP  600
QLVEGAYAWG FDIHSWQKRL SPLTWPEILR QLALSAGFGP WLKKKGSWLS FLGDKDEVKA  660
CEDIISTIRS GSAAENAFAL MREKGLLLPR KSRHRLTPGT VKFAAFHILS LEGSKGLTVL  720
ELAEKIQESG LRDLTTSKTP EASISVALTR DIKLFERIAP STYCVRAPYR KDPVDAEAIL  780
IEARKKIRAF ENGSTGVEDV ERDEGSEGVA DEDPEVDDIS VTPANASKNA DDLGEENVLS  840
ANGKDDMICG VKADIKNGIK KDLSCLPSSS VKNDVVQTCL DNKNVEVEIN QAHSWIQGLT  900
EGDYCHLSVE ERLDALVALI GIANEGNSIR AVLEERMEAA NSLKKQMWAE AQLDKNCMRD  960
IMKLDFEYSK TEPRMPQHII QIPANERNNI NIEPTQSTDE QKPLEMVSND RTFVTQNTDM  1020
GHDNFASQHG YASKRSRSQL KSYIGQRSEE IYVYRSLPLG QDRRHNRYWQ FAASSSRNDP  1080
CSGLIFVELH DGKWRLIDTE EAFEALVTSL DMRGIRESHL RIMLLKIEGS FKENVHYNFQ  1140
LARNHCLKEK GVENEAAEMN SSPDSSADFD SPSSALLCGS NSDSVETSNS FRVELGRNDT  1200
EKKNLLQRYQ DFQGWMWSES FKSLLPFARK HGKKRCDQLL EHGAERMLWD STGTGLVESP  1260
LPVGVSLLKA LLVFLEASIP DEALESFWTE EEREKWVLEL NASSSPEDLI QVVTLLENAI  1320
KEEYLSSDIV TAKELLGAAS GDQGSVSVLP WIPQTVSAVA LRISELDASI QYIKHEKPDI  1380
TLADEDEEIR LPSGNSPFKS KTIKFLDDRD EAMREEVFMG KRNSKRGRAN CDPGSSRKVK  1440
RKKRRVGPNR STIVGRNAES MPLRLAQEGA EINSHQTGGR GRRTVRRRPE RRIIDDRVAD  1500
IVMPRNEEEE EEEEATQREM EEEWVIKEDE NAHHPVDYSR RDWGSDGNSN PNEASVEEKE  1560
RDEEYEGIGP SAMALEEEEE EAETSESSDE NGVPNKTWEE FGIESEDYSS DS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKD
2	1436	1444	RKVKRKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540467.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540467.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	V4L2Q3	0.0	V4L2Q3_EUTSA; Uncharacterized protein
STRING	XP_010540467.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1