PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540473.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 392aa MW: 43049.2 Da PI: 8.719

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.5e-18	48	108	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_010540473.1 48 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 108 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.8	1.8e-36	47	109	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k XP_010540473.1 47 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 109 579**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-7	36	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.95E-12	44	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.446	44	109	IPR001356	Homeobox domain
SMART	SM00389	9.9E-9	46	113	IPR001356	Homeobox domain
CDD	cd00086	1.87E-8	47	109	No hit	No description
Pfam	PF00046	2.0E-15	48	108	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MGSSNRHWPS MFKSKPHHQW QHDINSPILP SRSSPFSSGC EERSPDPKPR WNPKPEQIRI 60 LEAIFNSGMV NPPRDEIRRI RAQLQEYGQV GDANVFYWFQ NRKSRSKHKL RLLHNSKRSP 120 SQPQTQTLNS SASPSSSSSS SSPKSTKLYN TKNYTNSDTF NSNNTDIALG VNSSSIIPKG 180 GPVAVEKNPV LGMFPAEPAF LFPVSPMTTA GAFEGFTGGS HLGFVSGQMM SNVVTQEQKP 240 GAATTVGPCT GLLLSEIMNS VSYNGTNLSV KEHEEMRMKM LQQPQNLCYA TSSNTAPTSS 300 YNNSVVPSLS SASVTVSSVS DHRDQLQVQA GEKIRVYVNE MEVEVIYGPF NVREAFGSEE 360 AVLIDSAGQP VLTDEYGVLL RPLQHGASYY LI

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MGSSNRHWPS MFKSKPHHQW QHDINSPILP SRSSPFSSGC EERSPDPKPR WNPKPEQIRI  60
LEAIFNSGMV NPPRDEIRRI RAQLQEYGQV GDANVFYWFQ NRKSRSKHKL RLLHNSKRSP  120
SQPQTQTLNS SASPSSSSSS SSPKSTKLYN TKNYTNSDTF NSNNTDIALG VNSSSIIPKG  180
GPVAVEKNPV LGMFPAEPAF LFPVSPMTTA GAFEGFTGGS HLGFVSGQMM SNVVTQEQKP  240
GAATTVGPCT GLLLSEIMNS VSYNGTNLSV KEHEEMRMKM LQQPQNLCYA TSSNTAPTSS  300
YNNSVVPSLS SASVTVSSVS DHRDQLQVQA GEKIRVYVNE MEVEVIYGPF NVREAFGSEE  360
AVLIDSAGQP VLTDEYGVLL RPLQHGASYY LI

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540473.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540473.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
Swissprot	Q6X7J4	1e-144	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	V4M6W2	1e-147	V4M6W2_EUTSA; Uncharacterized protein
STRING	XP_010540473.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7206	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	3e-74	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]