PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540556.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 229aa MW: 26288 Da PI: 4.6858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	173	212	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RR++ ++ + Lr+++P + ++ a++L +Av+Y+ksL+ XP_010540556.1 173 KRREKTKKMMKMLRRIVPGG-----EQMDTASVLDEAVQYLKSLE 212 7***************95.....68**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.947	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-8	169	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-8	173	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.78E-6	173	216	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-8	173	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MQKDQNFHRK AKENHFMDEM GDRNMHIRYD SSAFDAVFPP CAKLRPFNGV ELEPSTVCPK 60 NFIVLDQTHD RSQVMYHPDM TRKLNSPALN AFASSFQNEH AREWFSNYEQ EASSSSSHKE 120 DSDEIDALLS CDDDEEEEEE DEEYDTGEVY TESPCSGYGW KESGNSSCNS GEKRREKTKK 180 MMKMLRRIVP GGEQMDTASV LDEAVQYLKS LELDAQKKKL GNGNFKIKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540556.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540553.2	1e-173	PREDICTED: transcription factor bHLH144-like
Refseq	XP_010540554.2	1e-173	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	3e-67	BH144_ARATH; Transcription factor bHLH144
TrEMBL	D7KEN4	1e-67	D7KEN4_ARALL; Uncharacterized protein
STRING	XP_010540556.1	1e-173	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	7e-51	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]