PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540558.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21849.6 Da    PI: 5.9777
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-173581349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    i+ +  r +tfskRr gi KKA+EL v+Cd++va ++fs++g+ +++
  XP_010540558.1 35 INIEEDRMITFSKRRSGIYKKANELVVMCDVDVAFLVFSKSGTPFTF 81
                    56667899**********************************98888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.3382585IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-222584IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-2426100IPR002100Transcription factor, MADS-box
CDDcd002652.09E-312697No hitNo description
PRINTSPR004041.2E-162747IPR002100Transcription factor, MADS-box
PfamPF003192.5E-203481IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-164762IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-166283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDKHSIHNSD QSSPSYPTMA EKKTKGKQKI EIKKINIEED RMITFSKRRS GIYKKANELV  60
VMCDVDVAFL VFSKSGTPFT FGHPSMEAVT ERFKNPNLPR SSMDNATLVT RAYRTQRISE  120
LAKDYEKLGD ELEVEREKGA KAEEEEVEET RNGWWNAPID DLSDENRHRM HDAFVELHDN  180
LCDLLAQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-1426109184Myocyte-specific enhancer factor 2A
3kov_B1e-1426109184Myocyte-specific enhancer factor 2A
3kov_I1e-1426109184Myocyte-specific enhancer factor 2A
3kov_J1e-1426109184Myocyte-specific enhancer factor 2A
3p57_A1e-1426109184Myocyte-specific enhancer factor 2A
3p57_B1e-1426109184Myocyte-specific enhancer factor 2A
3p57_C1e-1426109184Myocyte-specific enhancer factor 2A
3p57_D1e-1426109184Myocyte-specific enhancer factor 2A
3p57_I1e-1426109184Myocyte-specific enhancer factor 2A
3p57_J1e-1426109184Myocyte-specific enhancer factor 2A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540558.11e-141PREDICTED: agamous-like MADS-box protein AGL61
STRINGXP_010540558.11e-140(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-38AGAMOUS-like 57