PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540640.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 464aa MW: 50018.4 Da PI: 5.041

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.6e-31	243	301	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp++++itY++eHnh+ XP_010540640.1 243 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPNMLVITYTSEHNHP 301 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-31	236	303	IPR003657	WRKY domain
PROSITE profile	PS50811	32.902	237	303	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-26	240	303	IPR003657	WRKY domain
SMART	SM00774	7.7E-38	242	302	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	244	301	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MCSVFEFLDM DSFQGDLTDI LRGTGGGEHV SSSPGQPERN WPPPPPQRSD LHVDFPSAGF 60 GDPFMNMTDP LLQELNVVSS SGYFSGGGSG GGFSSDNISS SSSCSNNNHN NNNNNFMVPK 120 VFDDDHIKNQ CSVFPRIRIS PHNIVHDASP CNSPVVSAAF VAASPPTGII GKYPAVGNDM 180 INVDATNSPR NCLNGNNTCS SQLQISSPRN LGLKRRKSQA KKVVCIPAPA AANSRSSGEV 240 VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRADPNML VITYTSEHNH 300 PWPTQRNALA GSTRSTSHSS SKSPNANATS SRVATKDEPK PDTHSPAANP AVKEEIRDEC 360 QDMDFDVDDS NIQSYRPDVS SEVHHNSDDF FADLDELDGD DPLSLLLSQG FSSVSGSAAG 420 DGVRKNETAS SDAFGDFCFD WSVNRNDDNT TSFEDGDDSN SKSL

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MCSVFEFLDM DSFQGDLTDI LRGTGGGEHV SSSPGQPERN WPPPPPQRSD LHVDFPSAGF  60
GDPFMNMTDP LLQELNVVSS SGYFSGGGSG GGFSSDNISS SSSCSNNNHN NNNNNFMVPK  120
VFDDDHIKNQ CSVFPRIRIS PHNIVHDASP CNSPVVSAAF VAASPPTGII GKYPAVGNDM  180
INVDATNSPR NCLNGNNTCS SQLQISSPRN LGLKRRKSQA KKVVCIPAPA AANSRSSGEV  240
VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRADPNML VITYTSEHNH  300
PWPTQRNALA GSTRSTSHSS SKSPNANATS SRVATKDEPK PDTHSPAANP AVKEEIRDEC  360
QDMDFDVDDS NIQSYRPDVS SEVHHNSDDF FADLDELDGD DPLSLLLSQG FSSVSGSAAG  420
DGVRKNETAS SDAFGDFCFD WSVNRNDDNT TSFEDGDDSN SKSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-25	217	304	2	80	Disease resistance protein RRS1
5w3x_D	7e-25	217	304	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540640.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X1
Swissprot	Q9SA80	1e-145	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	V4KUS1	1e-145	V4KUS1_EUTSA; Uncharacterized protein
STRING	XP_010540640.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-119	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]