PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540687.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 164aa MW: 17875.2 Da PI: 8.5084

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.7	2.6e-45	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_010540687.1 14 PCAACKLLRRRCGEDCVFAPYFPADEPRKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010540687.1 109 MAQAE 113 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.172	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-45	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MKEGGHRKQG TSPPCAACKL LRRRCGEDCV FAPYFPADEP RKFANVHKVF GASNVNKMLQ 60 ELPVHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLAMA QAEVVHLRVR 120 HSASHSSSPS SSGSPSSNQV SPRVNNPMFD HMVDHASLGE SMWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540687.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540687.1	1e-120	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	3e-77	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0D2UNR8	3e-88	A0A0D2UNR8_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5Q7G3	3e-88	A0A2P5Q7G3_GOSBA; Uncharacterized protein
STRING	XP_010540687.1	1e-119	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-74	LOB domain-containing protein 4