PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540760.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 490aa    MW: 54933.1 Da    PI: 4.7488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.2e-36491402102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  XP_010540760.1  49 FLSKTYDMVNDPATDSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKT 134
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_010540760.1 135 ITRRKP 140
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-4041133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3644138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.0E-6545138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3249138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDDARSGNSK GESTKSDAGG GGGVSAPPPS PPPQPQPMAV QNANAPPPFL SKTYDMVNDP  60
ATDSIVSWSP TNNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFLRGQRH LLKTITRRKP AHGHQHSHGQ NSSVGACVEV GKFGLEEEVE RLKRDKNVLM  180
QELVRLRQQQ QSTDNQLQKM VQRLQGMEQR QQQIMSFLAK AVQNPHFLAQ FLQQQQQQQQ  240
QQNEGNRCIS EANKKRRLKQ EGIAEDQNVA SPDGQIVKYQ PPMHEQAKSM IRQLMKMEPY  300
KSGDNTFLLG NDTSSPSHVS GGVTLQEMPP TSLPHPSSDI DRFPESEEPT KDSPDLTLPE  360
FSEMIPEGIA EVPAETFMEP FTGYAPFVDS DLLANGSVPF DIDDIPPGPE MDLLVDYSSL  420
LEDYLASSPV ADDMDSASGD VRTGSNETET EKKQNGWDED RAKHMDKLTE QMGLLSPEIK  480
DLPRFRQEEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-274713827129Heat shock factor protein 1
5d5v_B2e-274713827129Heat shock factor protein 1
5d5v_D2e-274713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252259NKKRRLKQ
2253258KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540761.10.0PREDICTED: heat stress transcription factor A-1d isoform X1
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A1J3JQP30.0A0A1J3JQP3_NOCCA; Heat stress transcription factor A-1d
TrEMBLD7KHI80.0D7KHI8_ARALL; ATHSFA1D
STRINGXP_010540760.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-175heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]