PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540778.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LSD
Protein Properties Length: 153aa    MW: 15592.1 Da    PI: 7.7276
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.18.2e-153660125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL+YP GA+sV+Ca+C++V
  XP_010540778.1 36 CSGCRNLLMYPVGATSVCCAVCNAV 60
                    ************************9 PP
2zf-LSD146.75.2e-157599125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_010540778.1 75 CGGCHTLLMYIRGATSVQCSCCHTV 99
                    ************************9 PP
3zf-LSD139.87.4e-13113137125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C +V
  XP_010540778.1 113 CGNCRMLLMYQYGATSVKCAVCSFV 137
                     **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-143363IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-113660IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.5E-1572101IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-127599IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-11110138IPR005735Zinc finger, LSD1-type
PfamPF069435.8E-12113137IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPPP ATNGAGGGGG QSQLVCSGCR NLLMYPVGAT SVCCAVCNAV  60
TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL  120
MYQYGATSVK CAVCSFVTPV GASTSTSEQK FSS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540778.11e-105PREDICTED: protein LOL1-like
SwissprotQ93ZB19e-79LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS82e-87A0A2C9UHS8_MANES; Uncharacterized protein
STRINGXP_010540778.11e-104(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-65lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]