PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540852.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 350aa    MW: 39628.8 Da    PI: 5.1451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19146196256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  XP_010540852.1 146 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAFKLRGE 196
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-34145205No hitNo description
SuperFamilySSF541714.12E-23146204IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-32146204IPR001471AP2/ERF domain
SMARTSM003809.0E-41146209IPR001471AP2/ERF domain
PROSITE profilePS5103223.103146203IPR001471AP2/ERF domain
PfamPF008472.4E-13147196IPR001471AP2/ERF domain
PRINTSPR003673.3E-11147158IPR001471AP2/ERF domain
PRINTSPR003673.3E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEEEHKISSS SSKGKDVDSG SERSMQWKSV LGETSQRALK KIRSPDHRHI PYYLLPSPFP  60
SSVSAFPDPS IQLPQQSGYV PSTNQPSQSQ QRIISFAPQH QQPMAQQRQY LLQYWSPRGR  120
LAMMNSLGQE GGQLRPSLQP FSATKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE  180
EAALAYDREA FKLRGENARL NFPELFVNKE NASNSSHQEQ QEVSRALHEP SKETLQNEQE  240
AANESRVDNL DEDWGIGSSE AVAGEGVVCD AGEMGWREMA EAWFNAIPEG WGPGSPVWDD  300
LDTTNNLLLQ PQLSFSNQNQ HEPCDAQPED SSSLSSPSCP MRPFFWKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20145203160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540852.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540852.10.0PREDICTED: ethylene-responsive transcription factor ERF054
SwissprotQ9SKT12e-67ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A061E4171e-97A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
TrEMBLA0A1U8NA671e-97A0A1U8NA67_GOSHI; ethylene-responsive transcription factor ERF054-like
STRINGXP_010540852.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.16e-63ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]