PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541108.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 200aa    MW: 22733.4 Da    PI: 5.4455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-1060102855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      E++RR+r N++++ Lr+++Pk +      Kl+  ++ +  + YIk+Lq
  XP_010541108.1  60 SEKNRRRRFNQRLFALRSVVPKiS------KLDRTSVIKDSIAYIKELQ 102
                     6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.43352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1556128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1458119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1158107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-959106No hitNo description
PfamPF000101.2E-760102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MENLGDEYNN YWETTMFFRN EELEYSSWAF EEALSGGSGG LSSPDVGTVT SPSASKTVVS  60
EKNRRRRFNQ RLFALRSVVP KISKLDRTSV IKDSIAYIKE LQEQEKKLEA EIRELESSII  120
FYRNPINGYR DHSLHQELMS DVRSKKMKQI IGSSTVQISP IEALEADEEE RGILEAKILT  180
AIAASNASNY SSHERNGKFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541107.11e-115PREDICTED: transcription factor bHLH27
SwissprotQ700E35e-61BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A3N6S8Y65e-61A0A3N6S8Y6_BRACR; Uncharacterized protein
STRINGXP_010541107.11e-115(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.42e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]