PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541111.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-PHD
Protein Properties Length: 672aa    MW: 75911.8 Da    PI: 7.4128
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.8e-10467510952
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     ++ +e L ++F +n  ps++ r  L+k+l+L+ ++V+ WF+N R
  XP_010541111.1 467 RDAVEKLRKVFTENELPSKSVRDNLSKELDLEPDKVSEWFKNAR 510
                     577899************************************99 PP
2PHD40.46.6e-14198252150
                     SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C+ C++ ++  +++++lCd +C+++fH+kCl+++le+e++p g  +w+C+ C +
  XP_010541111.1 198 FCAKCSSREAflDNDIILCDgTCNRAFHQKCLEPPLETESIPPGdqSWFCKLCIC 252
                     6999*9955556********56********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.88E-14190256IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.6E-12194253IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.87196253IPR019787Zinc finger, PHD-finger
PfamPF006283.6E-11198252IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-9198251IPR001965Zinc finger, PHD-type
CDDcd155043.60E-31198250No hitNo description
PROSITE patternPS013590199250IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.649456516IPR001356Homeobox domain
SMARTSM003894.3E-9458520IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-11459525IPR009057Homeodomain-like
SuperFamilySSF466896.42E-9459522IPR009057Homeodomain-like
CDDcd000862.16E-8460520No hitNo description
PfamPF000468.8E-8467510IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MQEGEIREQI DREPEKFSIG ETGSMLSAPF AKAGRKIANR RKNKQKRKTN AEKSGSISSR  60
KKASGAAFSS EKKSSRVHSK DADGEGKAKK ARKRKQKRQR GKVEPDEGLR LQRRTRYLLI  120
KMKLEQNLID AYSGEGWKGQ SREKIRPDKE LERARKQILK CKLGIRDAIH ELDMLSSVGS  180
IEEKVIAPDG SVHHEHIFCA KCSSREAFLD NDIILCDGTC NRAFHQKCLE PPLETESIPP  240
GDQSWFCKLC ICKMEIIDSM NAHIGTHFPV DSNWKDIFKE EAGHPNGSDG QLKNGEDWPS  300
DDSEDDDYDP EMREQGSDMS GVGSGGDDGE SISTSLSWSS GGVALSSGSG RWGLESDNIS  360
HAVGHRVDSG ETSNEDIVCG PRQRRAVDYR KLYDEMFGKD ALLHEQFSED EDWGPKHKRR  420
RKKESDAAST LVTLFESNEK DPNVETTMER ERLSADIKEK PASRLPRDAV EKLRKVFTEN  480
ELPSKSVRDN LSKELDLEPD KVSEWFKNAR FMAMKSRKTE STKPAHGSTV LSEGPEPGAI  540
HEKHEETNEP RNTFVETVSY GSKDLENTSL SNRQKSSEQV AGQVGVDISL KKHTEEKNRE  600
GKTTEHNQEF ETEMERLCRT QNKIQDMKSR LSRFRRQRGR KKLGKSSCLL EENSIVYVPI  660
AEIKEKELDA AV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895KKARKRKQ
29499KQKRQR
3418423RRRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541111.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541111.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_010541112.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4MG340.0V4MG34_EUTSA; Uncharacterized protein
STRINGXP_010541111.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]