PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541114.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-PHD
Protein Properties Length: 499aa    MW: 56113.1 Da    PI: 4.9915
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.11.9e-10294337952
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     ++ +e L ++F +n  ps++ r  L+k+l+L+ ++V+ WF+N R
  XP_010541114.1 294 RDAVEKLRKVFTENELPSKSVRDNLSKELDLEPDKVSEWFKNAR 337
                     577899************************************99 PP
2PHD414.4e-142579150
                    SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD  1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50
                    +C+ C++ ++  +++++lCd +C+++fH+kCl+++le+e++p g  +w+C+ C +
  XP_010541114.1 25 FCAKCSSREAflDNDIILCDgTCNRAFHQKCLEPPLETESIPPGdqSWFCKLCIC 79
                    6999*9955556********56********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.24E-141783IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-122180IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.872380IPR019787Zinc finger, PHD-finger
CDDcd155043.66E-312577No hitNo description
PfamPF006282.4E-112579IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-92578IPR001965Zinc finger, PHD-type
PROSITE patternPS0135902677IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.649283343IPR001356Homeobox domain
SMARTSM003894.3E-9285347IPR001356Homeobox domain
SuperFamilySSF466894.23E-9286350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-11286352IPR009057Homeodomain-like
CDDcd000863.30E-9287347No hitNo description
PfamPF000466.0E-8294337IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MLSSVGSIEE KVIAPDGSVH HEHIFCAKCS SREAFLDNDI ILCDGTCNRA FHQKCLEPPL  60
ETESIPPGDQ SWFCKLCICK MEIIDSMNAH IGTHFPVDSN WKDIFKEEAG HPNGSDGQLK  120
NGEDWPSDDS EDDDYDPEMR EQGSDMSGVG SGGDDGESIS TSLSWSSGGV ALSSGSGRWG  180
LESDNISHAV GHRVDSGETS NEDIVCGPRQ RRAVDYRKLY DEMFGKDALL HEQFSEDEDW  240
GPKHKRRRKK ESDAASTLVT LFESNEKDPN VETTMERERL SADIKEKPAS RLPRDAVEKL  300
RKVFTENELP SKSVRDNLSK ELDLEPDKVS EWFKNARFMA MKSRKTESTK PAHGSTVLSE  360
GPEPGAIHEK HEETNEPRNT FVETVSYGSK DLENTSLSNR QKSSEQVAGQ VGVDISLKKH  420
TEEKNREGKT TEHNQEFETE MERLCRTQNK IQDMKSRLSR FRRQRGRKKL GKSSCLLEEN  480
SIVYVPIAEI KEKELDAAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250RRRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541114.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541111.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_010541112.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-152PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4MG341e-173V4MG34_EUTSA; Uncharacterized protein
STRINGXP_010541111.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-142pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]