PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541156.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 123aa    MW: 13577.2 Da    PI: 6.7921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-173684355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr++k +g+WvAeIr+p   +kr r +lg++ +a  Aa+a++ a  +l+g
  XP_010541156.1 36 YKGVRRRK-WGKWVAEIREP---NKRSRLWLGSYSSAVAAARAYDIAVFYLRG 84
                    9****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.9063592IPR001471AP2/ERF domain
SMARTSM003801.9E-373598IPR001471AP2/ERF domain
PfamPF008479.3E-123684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-303693IPR001471AP2/ERF domain
CDDcd000189.79E-263694No hitNo description
PRINTSPR003678.7E-123647IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-213693IPR016177DNA-binding domain
PRINTSPR003678.7E-127494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MVDEEEEEEE EEGLMCSTAS SSRKTRRRDG GETAPYKGVR RRKWGKWVAE IREPNKRSRL  60
WLGSYSSAVA AARAYDIAVF YLRGPSARLN FPDLLPQDVA DAGDGAVISA DAIRKKAAEV  120
GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-163092972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12542RRRDGGETAPYKGVRRRK
23642KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541156.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541156.11e-83PREDICTED: ethylene-responsive transcription factor RAP2-1-like, partial
SwissprotQ8LC309e-43RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A4D6NRN84e-44A0A4D6NRN8_VIGUN; EREBP-like factor
STRINGXP_010541156.14e-83(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-29related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]