PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541160.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 271aa MW: 30644.3 Da PI: 4.6823

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.6e-18	35	83	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a+++a+++++g XP_010541160.1 35 YLGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSMRG 83 88****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.16E-30	34	92	No hit	No description
PROSITE profile	PS51032	21.18	34	93	IPR001471	AP2/ERF domain
SMART	SM00380	8.3E-31	34	99	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-19	35	93	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.1E-27	35	93	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	35	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-9	35	46	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-9	57	73	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEFKGNSKSG SSSKSKRSEQ KQQQQQQQRD DEIRYLGVRR RPWGRYAAEI RNPTTKERYW 60 LGTFDTAEEA ALAYDRAARS MRGSSNVART NFVYSDMPRG SSVTPFVSPD ESYRFISEIF 120 NSPNKVENYT YNNQYPLVNN QTPLHFSCNN NNNDSLNAEP VNVNVEGWFE GAECSYQTVD 180 SNVVQSHNHE LPPLPPSTCY GAELTLPQTD FYANSYLGQS SCQDVNGLNA AFGMEEFAFR 240 HNSFMDQDPL SCTGNDGLDL DFDSASGFFL H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	8e-18	35	84	3	53	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	1e-17	34	87	14	68	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541160.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF087-like
Swissprot	Q9FZ90	3e-79	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	A0A3N6SY37	6e-81	A0A3N6SY37_BRACR; Uncharacterized protein
TrEMBL	A0A3P6DY60	6e-81	A0A3P6DY60_BRAOL; Uncharacterized protein
STRING	XP_010541160.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12933	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	1e-64	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]