PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541168.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21659.2 Da    PI: 4.7494
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-201157349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +++   rqvtfskRr+g++KKA+EL +LC+aev +++fs+ gk + y
  XP_010541168.1 11 VQDMNTRQVTFSKRRTGLFKKASELATLCNAEVGIVVFSPGGKPFSY 57
                    567788**********************************9996665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.184161IPR002100Transcription factor, MADS-box
CDDcd002651.19E-31272No hitNo description
SuperFamilySSF554557.46E-27272IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-20323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGRRKIEMEK VQDMNTRQVT FSKRRTGLFK KASELATLCN AEVGIVVFSP GGKPFSYGKP  60
SVEAVTERFI NDFEETGSGC NDETRVRKRD KQDEIIENLD RLTKQLKAEK KRGEMLQENL  120
ESAGYERFLK PVEELSLDEL KEYKSVLQAM HDEIKGRATQ MKASSTLMLL SADNGSCNAA  180
NDDDDYDDDD N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15169169MEF2 CHIMERA
6byy_B5e-15169169MEF2 CHIMERA
6byy_C5e-15169169MEF2 CHIMERA
6byy_D5e-15169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541168.11e-139PREDICTED: agamous-like MADS-box protein AGL29
SwissprotO647031e-69AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A178VU293e-67A0A178VU29_ARATH; AGL29
STRINGXP_010541168.11e-139(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-72AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]