PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541267.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 244aa MW: 27884.5 Da PI: 8.6398

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.5	7.4e-42	5	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++GfrF P ++el+++yL++k+eg+ ++++vi+ vd++++eP +Lp+ ++++++++w+fF+kr++++a+g r++r+t+sgyWkatg+ + XP_010541267.1 5 QVGFRFYPIEDELISFYLRNKLEGHLvGTMARVIPVVDVFELEPDQLPQlageRCRGDREQWFFFVKRQEREARGGRPSRTTASGYWKATGSPGP 99 68*********************94344567**********9656766666888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++++g+kkt+vfy+grap+g+kt+W m+ey+ XP_010541267.1 100 VFSSDNRVIGVKKTMVFYTGRAPTGRKTKWKMNEYK 135 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-44	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	45.217	4	161	IPR003441	NAC domain
Pfam	PF02365	6.2E-22	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEEIQVGFRF YPIEDELISF YLRNKLEGHL VGTMARVIPV VDVFELEPDQ LPQLAGERCR 60 GDREQWFFFV KRQEREARGG RPSRTTASGY WKATGSPGPV FSSDNRVIGV KKTMVFYTGR 120 APTGRKTKWK MNEYKAIDGI ANMPTIPKLR HEFSLCRLYV TSGSSRAFDR RPMEAYQMEG 180 MLLSNGAEPS SRARMMGERA SSSETSYSRG DHADLPENNT TQTNSAMVDG LTQPFWEWEQ 240 LNWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-27	7	166	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-27	7	166	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-27	7	166	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-27	7	166	20	170	NO APICAL MERISTEM PROTEIN
4dul_A	1e-27	7	166	20	170	NAC domain-containing protein 19
4dul_B	1e-27	7	166	20	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541267.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541267.2	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-114	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	V4KW25	1e-120	V4KW25_EUTSA; Uncharacterized protein
STRING	XP_010541267.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-121	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]