PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541387.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 252aa    MW: 28689.1 Da    PI: 7.3716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-17855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_010541387.1  8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWGNYL 55
                     79******************************************9996 PP
2Myb_DNA-binding56.27.9e-1861106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
   XP_010541387.1  61 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.723355IPR017930Myb domain
SuperFamilySSF466898.11E-306102IPR009057Homeodomain-like
SMARTSM007171.2E-15757IPR001005SANT/Myb domain
PfamPF002494.8E-16855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20962IPR009057Homeodomain-like
CDDcd001673.67E-111055No hitNo description
PROSITE profilePS5129427.81456110IPR017930Myb domain
SMARTSM007172.2E-1760108IPR001005SANT/Myb domain
PfamPF002492.8E-1661105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2363109IPR009057Homeodomain-like
CDDcd001673.15E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVQEEIRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WGNYLHPGLK  60
RGKMTPQEER LVLELHAKWG NRWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKKRSTSPT  120
SSSSNCCSST VTSANTQDSL LSPDSGKASF YDTGGFDGKL NQGVEGCEEG YSMDDIWKEI  180
DQSEANTIKP VRDFYAEQSW FFNCLPLASP AWESPLDSIW NTEADESKMS IAIDQFPLCP  240
EYGRSSSSSL AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2951101105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-28111051159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-28111051159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541387.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0628941e-112AF062894.1 Arabidopsis thaliana putative transcription factor (MYB59) mRNA, complete cds.
GenBankAY5196411e-112AY519641.1 Arabidopsis thaliana MYB transcription factor (At5g59780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541387.10.0PREDICTED: transcription factor MYB59 isoform X1
SwissprotQ4JL841e-121MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0D3BHG51e-120A0A0D3BHG5_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZRN71e-120A0A3P5ZRN7_BRACM; Uncharacterized protein
TrEMBLA0A3P6BGL91e-120A0A3P6BGL9_BRAOL; Uncharacterized protein
TrEMBLM4CR531e-120M4CR53_BRARP; Uncharacterized protein
STRINGXP_010541387.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-118myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]