PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541388.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 232aa MW: 26168.2 Da PI: 8.2676

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.9e-18	41	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ XP_010541388.1 41 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 86 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.693	1	35	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.2E-9	21	47	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.43E-22	21	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.814	36	90	IPR017930	Myb domain
SMART	SM00717	2.2E-17	40	88	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	41	85	IPR001005	SANT/Myb domain
CDD	cd00167	7.41E-13	43	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.7E-21	48	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGFYCQSFRF EGGGRNIIGL NRTGKSCRLR WGNYLHPGLK RGKMTPQEER LVLELHAKWG 60 NRWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKKRSTSPT SSSSNCCSST VTSANTQDSL 120 LSPDSGKASF YDTGGFDGKL NQGVEGCEEG YSMDDIWKEI DQSEANTIKP VRDFYAEQSW 180 FFNCLPLASP AWESPLDSIW NTEADESKMS IAIDQFPLCP EYGRSSSSSL AS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-18	22	90	37	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-18	22	90	91	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-18	22	90	91	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-18	22	90	60	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-18	22	90	37	105	C-Myb DNA-Binding Domain
1msf_C	1e-18	22	90	37	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541388.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:16531467}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ075253	1e-105	DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541388.1	1e-174	PREDICTED: transcription factor MYB59 isoform X2
Swissprot	Q4JL84	4e-92	MYB59_ARATH; Transcription factor MYB59
TrEMBL	A0A398A1C3	1e-100	A0A398A1C3_BRACM; Uncharacterized protein
STRING	XP_010541387.1	1e-158	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.2	1e-100	myb domain protein 59

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]