PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541969.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 1083aa    MW: 119590 Da    PI: 6.9917
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + ++ +  +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_010541969.1 147 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsMTPPVQ--ELVARDIHDNVWSFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDD 237
                     99*****************************96545444..8************************************************..456 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+v+++r+
  XP_010541969.1 238 KKQLLVGIRRA 248
                     7778****996 PP
2Auxin_resp116.22.8e-38273356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPr+s+seFv++++ + +a++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_010541969.1 273 AAHAAANNSPFTIFYNPRTSPSEFVIPLATYYRAVHgNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 356
                     79*********************************99*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-42137276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-40139261IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-20146247No hitNo description
SMARTSM010191.3E-21147249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815147249IPR003340B3 DNA binding domain
PfamPF023622.2E-20147248IPR003340B3 DNA binding domain
PfamPF065071.9E-33273356IPR010525Auxin response factor
PfamPF023098.4E-79731059IPR033389AUX/IAA domain
PROSITE profilePS5174525.3199761060IPR000270PB1 domain
SuperFamilySSF542771.96E-69891054No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MTVAAIGNVP PAAAAPATAP CTNAAEDGSG AVAAEMKKGI NSELWQACAG PLVNLPAAGT  60
HVVYFPQGHS EQVAASLRKD VDAQTPSYPN LPSKLICLLH NVTLHADPDT DEVYAQMTLQ  120
PVPSVDKEGL LRSDLSLRTN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM  180
TPPVQELVAR DIHDNVWSFR HIYRGQPKRH LLTTGWSLFV SGKRLLAGDS VLFIRDDKKQ  240
LLVGIRRAHR QSTNMSSSVL STDSMHIGIL AAAAHAAANN SPFTIFYNPR TSPSEFVIPL  300
ATYYRAVHGN QISLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD  360
ESTAGEKRNR VSIWEIEPVT APFFICPPPY FRSKRPREPG LLPDNDLTDM DHMFKRAMPW  420
LGDNFLLRDS QGLPGLSLVQ WMNMRQNPTL SHSLQSDYLH SLSGSTLPNF TGSDLSRLQF  480
GFSPPQIAQP SSSDFTQRLP QPVQQVGQLP KIPSSNPLGS NVQPQQNMMS PTLPTSQVPA  540
RVLQTQNILQ GNDVLQKQVP SLPNQQLPRN ISHNLVLQQQ QQLPQKTDQN FVVSNQQQNL  600
MMQPQLTDQV NRHLQIPDNQ IQQLLLLQKL QQQQQALVDH PSQLGLVQDQ PRQMLDGSQA  660
LPKSTTSTQI PETPQVVQMS LPQPSIVAQQ MAKGGNRDAG LGHFTQQSKL ENRQSVKLSE  720
WPGRVDLSPI LTSPQLSVTG ASSMTGMASD IPSCPNGVQL MLNKRSDMSL SNGDGIVHSG  780
STLLHPAARE TVASDKNHKK LKESWPKCDV RPSLDISKCQ SQGFLPPQSY INGTLAQTEH  840
FDTSSSTTSV CVPQNDAYVL QNNNSFSSNP NSSMMRDSGQ ERDVQTVLYV ADIEGHLGMP  900
TNSDPRKELS NTLAPGCILE NYDNSKDTQQ ELSSSMVSQS FGVPDMVFNS IDSNVNNGGF  960
GNSSQWASQP QFQRKRTFTK VYKRGAVGRS IDITRYSGYN DLKQDLARRF GIEGQLEDRG  1020
RIGWKLVYVD HENDVLLVGD DPWEDFVNCV RCIKILSPQE ELDGDFGTSG LHNQACSSSD  1080
NGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1643737748388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541969.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010541969.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19