PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542039.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 391aa    MW: 42778.9 Da    PI: 6.4272
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186e-062363539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ ++e +   +C+++   lC +C  + H+       H++
  XP_010542039.1 23 ACDFCGEDKPVVYCRSDAASLCLSCDRHVHSAnslsrrHSR 63
                    6******99*********************55667777765 PP
2zf-B_box18.83.3e-0665111441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41 
                       C+++++++++  C + +  lC+ C l+ H g          H++++
  XP_010542039.1  65 LLCDRCSSQPASVRCVEEKASLCHRCDLSCH-GasfsasassgHKRQT 111
                     57***************************99.5577777777787765 PP
3CCT58.32.6e-20337380144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a++RY+eK+ktRkFeK++rY+sRK++A+ R RvKGrF k+ 
  XP_010542039.1 337 RIDAVMRYREKKKTRKFEKRVRYASRKERADVRRRVKGRFIKAG 380
                     6679************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-111966IPR000315B-box-type zinc finger
PROSITE profilePS501199.4281966IPR000315B-box-type zinc finger
CDDcd000211.56E-72466No hitNo description
PROSITE profilePS501199.262112IPR000315B-box-type zinc finger
CDDcd000211.71E-466112No hitNo description
SMARTSM003360.367112IPR000315B-box-type zinc finger
PfamPF062032.0E-15337379IPR010402CCT domain
PROSITE profilePS5101715.2337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MFLLVIADLT HSLVRRFQKM GHACDFCGED KPVVYCRSDA ASLCLSCDRH VHSANSLSRR  60
HSRTLLCDRC SSQPASVRCV EEKASLCHRC DLSCHGASFS ASASSGHKRQ TISSYSGCPS  120
SAELTSIWSS VWTVPALAEG STLEKPLVMM RSTEKNSALH SQCSSIPETS VLSDNLDLLI  180
GTDASANLPH PGIDDLGLSR DCVYEDLNLG ELDFALENFD SLFGEALNDS DTILGEGDLS  240
ATNPNGQDIF AAEEVSVRSA NSNQFSCNNM ATADSVLSNK TEPAICFTSR QAHSSLSFSG  300
ISADTNSTLD NQDCGASPAM ILTGEPLFTE GLLQKSRIDA VMRYREKKKT RKFEKRVRYA  360
SRKERADVRR RVKGRFIKAG EAYDYDPKER P
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542039.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-113COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A067JGL61e-124A0A067JGL6_JATCU; Uncharacterized protein
STRINGXP_010542039.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-101CONSTANS-like 9