PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542047.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 1126aa MW: 127467 Da PI: 7.8379

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37	5.9e-12	5	54	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ql++Le+++ +++yp+a+e+++ +k+l+Lt + V+ WF +R ++k+ XP_010542047.1 5 SPVQLQALEDFYLEKKYPTAKEIKDYSKSLRLTVKEVRGWFIEKRRRDKR 54 788********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.2E-9	1	59	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.07	1	55	IPR001356	Homeobox domain
CDD	cd00086	3.84E-6	2	49	No hit	No description
SuperFamily	SSF46689	1.2E-10	3	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-10	4	55	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-9	5	54	IPR001356	Homeobox domain
PROSITE profile	PS50827	12.185	360	419	IPR018501	DDT domain
SMART	SM00571	2.0E-6	360	419	IPR018501	DDT domain
Pfam	PF02791	1.9E-7	361	414	IPR018501	DDT domain
Pfam	PF05066	3.9E-6	501	569	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.2E-8	636	677	IPR028942	WHIM1 domain
Pfam	PF15613	3.1E-10	757	830	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1126 aa Download sequence Send to blast
MRKKSPVQLQ ALEDFYLEKK YPTAKEIKDY SKSLRLTVKE VRGWFIEKRR RDKRRDGCVM 60 PSASTSAVET SNKRKDPGSY DISNMSSSTS SRCTCGSSGV EKRSSTGENT ASIQKLLAPQ 120 YILAKIFRKD GPPLGVGFDS LPSRTRKASW LVPADQIQQK QRVARKRKIS ELMNHHNRDC 180 IEENATRAKH GIGKGLMTVW RAMNPTGVIP PGIDIPEERI TLHQRPSRKS QPQKKKQRQL 240 ASILKQKMLQ KSSREKKCSI NREVELHKDK TRVACKENCE LSLDEEVSEE NQEKFAILLD 300 DEELEMRELQ AGANPLTCSG HHPSSGLHVC FLCKDLLPKF PPNSVKMKLP FGMHPWDSSP 360 ESVKKLFKVL HFLYTYSVAL DMHYFTLEEF VKAFHDKDSL LLGKIHLSLL KLLVLDLETE 420 LQRGTFTNLS ISCKFLALLH SVESQILILD LWKDSLSPLT WTEILRQILV AAGFGSAKGA 480 VRREELSKER RLLIKHGLCL GTLKGELFRL LFEQGNNGLK VSDLANSAQV AQLNLATSSE 540 ELERSISATL ASDITLFEKI SGSAYRLRAS CFSEDPEKSQ SDSDDFGSVD EPEDDSSSSS 600 GDDSENLALS KIRHRSRQKR KNKILDVNTE IDESHPGEPW LLGLMEGDYS DLSIEEKLDV 660 LVALIDILSS GSTVRMEESA KTNVDCVPSI YTRGSGGKIK RGSSNQHNYP RESWVHGWQL 720 HSSKGESISD SRPIDSSTVA GAFAKQTGDK ADGHPMQSVY LGSDRRFNRY WLFLGPCHTN 780 DPGHRSVYFE SSEDGHWKVI DNEEVLRALL SILDDRGTRE ANLIGSLEKR EAFLCQAMSS 840 RQMTQSDTSR FTDVVREDSS SPVSDIDNNL CLTEVANNHL SSPRGAIVFE VESKREQKLR 900 WIRVQEFDDW IWASFYSNLN AVKYSRRSYL DSLTRCKICH DLYWRDEKHC KICHATFELD 960 IDLEERYAVH AATCRKKGED DSFPEHKVLP PQLQSLKAAV HAIESAMPEE ALIGAWRKSA 1020 RRLWVKRLRR TSSLSELLQV IGNFVGAINV DWLWRYDDDG DDDDGHSHPV MEEIITCFPS 1080 IPQTSSAVAL WLVKLDSLTA SYLEKLQPES NQERRTRSTS KRASKL

Sequence ? help Back to Top

Protein Sequence Length: 1126 aa Download sequence Send to blast

MRKKSPVQLQ ALEDFYLEKK YPTAKEIKDY SKSLRLTVKE VRGWFIEKRR RDKRRDGCVM  60
PSASTSAVET SNKRKDPGSY DISNMSSSTS SRCTCGSSGV EKRSSTGENT ASIQKLLAPQ  120
YILAKIFRKD GPPLGVGFDS LPSRTRKASW LVPADQIQQK QRVARKRKIS ELMNHHNRDC  180
IEENATRAKH GIGKGLMTVW RAMNPTGVIP PGIDIPEERI TLHQRPSRKS QPQKKKQRQL  240
ASILKQKMLQ KSSREKKCSI NREVELHKDK TRVACKENCE LSLDEEVSEE NQEKFAILLD  300
DEELEMRELQ AGANPLTCSG HHPSSGLHVC FLCKDLLPKF PPNSVKMKLP FGMHPWDSSP  360
ESVKKLFKVL HFLYTYSVAL DMHYFTLEEF VKAFHDKDSL LLGKIHLSLL KLLVLDLETE  420
LQRGTFTNLS ISCKFLALLH SVESQILILD LWKDSLSPLT WTEILRQILV AAGFGSAKGA  480
VRREELSKER RLLIKHGLCL GTLKGELFRL LFEQGNNGLK VSDLANSAQV AQLNLATSSE  540
ELERSISATL ASDITLFEKI SGSAYRLRAS CFSEDPEKSQ SDSDDFGSVD EPEDDSSSSS  600
GDDSENLALS KIRHRSRQKR KNKILDVNTE IDESHPGEPW LLGLMEGDYS DLSIEEKLDV  660
LVALIDILSS GSTVRMEESA KTNVDCVPSI YTRGSGGKIK RGSSNQHNYP RESWVHGWQL  720
HSSKGESISD SRPIDSSTVA GAFAKQTGDK ADGHPMQSVY LGSDRRFNRY WLFLGPCHTN  780
DPGHRSVYFE SSEDGHWKVI DNEEVLRALL SILDDRGTRE ANLIGSLEKR EAFLCQAMSS  840
RQMTQSDTSR FTDVVREDSS SPVSDIDNNL CLTEVANNHL SSPRGAIVFE VESKREQKLR  900
WIRVQEFDDW IWASFYSNLN AVKYSRRSYL DSLTRCKICH DLYWRDEKHC KICHATFELD  960
IDLEERYAVH AATCRKKGED DSFPEHKVLP PQLQSLKAAV HAIESAMPEE ALIGAWRKSA  1020
RRLWVKRLRR TSSLSELLQV IGNFVGAINV DWLWRYDDDG DDDDGHSHPV MEEIITCFPS  1080
IPQTSSAVAL WLVKLDSLTA SYLEKLQPES NQERRTRSTS KRASKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	614	619	RSRQKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542047.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542047.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3-like
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A1J3DY83	0.0	A0A1J3DY83_NOCCA; Uncharacterized protein
STRING	XP_010542047.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator