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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_010542163.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family | bHLH | ||||||||
| Protein Properties | Length: 226aa MW: 25195.6 Da PI: 7.7299 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 47.7 | 2.8e-15 | 100 | 147 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+h E++RRd+iN+++++L ++ P++ +Kl+Ka++ e+A+e+I++Lq
XP_010542163.1 100 RSHASSEKKRRDKINEKYHNLEQITPHS-----GKLDKATTIELATEHIRELQ 147
68999**********************9.....9******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.939 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 6.15E-15 | 98 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.6E-12 | 100 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.1E-13 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.49E-12 | 100 | 149 | No hit | No description |
| SMART | SM00353 | 3.5E-12 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 226 aa Download sequence Send to blast |
MNMNTNTCQS SKGVVNFANW SEVLASIVSP GFGSNPLQEV VDASTAEFSG PLNPPYPINI 60 NLSPQPLIEG TEPRKEKAKW KDVGLGTKKT LGKKTATAAR SHASSEKKRR DKINEKYHNL 120 EQITPHSGKL DKATTIELAT EHIRELQRQK AEYLEMYPHL KPIMCMSPRL FNAMIPFMMP 180 PMPHMMPYNG QGQGFGSVPP SMSQNGKPFY ADQDHEGETS DHNQED |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 106 | 111 | KKRRDK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_010542163.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010542162.1 | 1e-171 | PREDICTED: transcription factor PIF1-like | ||||
| Refseq | XP_010542163.1 | 1e-171 | PREDICTED: transcription factor PIF1-like | ||||
| STRING | XP_010542162.1 | 1e-170 | (Tarenaya hassleriana) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G67110.1 | 3e-09 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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