PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542292.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 161aa    MW: 17533.8 Da    PI: 9.5576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-201868256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+tae+Aa+a++aa+++++g+
  XP_010542292.1 18 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEDAARAYDAAAREFRGA 68
                    59*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.3421875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-331875IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-231876IPR016177DNA-binding domain
PfamPF008475.1E-141867IPR001471AP2/ERF domain
CDDcd000184.13E-201875No hitNo description
SMARTSM003801.7E-381881IPR001471AP2/ERF domain
PRINTSPR003671.2E-111930IPR001471AP2/ERF domain
PRINTSPR003671.2E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTKRPDPVSP NPSAKEIRYR GVRKRPWGRY AAEIRDPGKK TRVWLGTFDT AEDAARAYDA  60
AAREFRGAKA KTNFPSPLAP SPNHSTTTLD CASPPELQLC LGGRACYQIP VARPVLFLNL  120
IGMGRQSDSD SSSVVDFEGG SGKRSQPLDL DLNLPPPPEQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211475163ATERF1
3gcc_A1e-211475163ATERF1
5wx9_A3e-21678275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695499e-42KT369549.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542292.11e-115PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_010542293.11e-115PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9MAI52e-53ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLD7L4024e-65D7L402_ARALL; ATERF-4/ATERF4/ERF4/RAP2.5
STRINGXP_010542292.11e-115(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-43ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]