PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542297.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-other
Protein Properties Length: 339aa    MW: 37667.2 Da    PI: 7.889
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.49.1e-071374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft++++ e+e+  ++  +  p ++  e LA+k            ++ +qV +WFqNrR+  
  XP_010542297.1 13 RFTQTEVAEMEAILQEhnTAMPARNVLEALADKFsesadrkgkiVVQFKQVWNWFQNRRYAL 74
                    69************9755889*********************999999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.9E-4781IPR001356Homeobox domain
SuperFamilySSF466893.55E-101278IPR009057Homeodomain-like
PROSITE profilePS500719.2161377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-71379IPR009057Homeodomain-like
CDDcd000867.05E-41375No hitNo description
PfamPF167191.1E-41139267IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRPPSNGVP AFRFTQTEVA EMEAILQEHN TAMPARNVLE ALADKFSESA DRKGKIVVQF  60
KQVWNWFQNR RYALRARGNK APGKLNVSSM PHDDQSNQTR SMFHPVVVPK TSHMPANVSA  120
PTPSPSVPGV TRSGSENSYL EFEAKSARDG AWYDVQAFLA HRNLETGDPE VQVRFAGFGV  180
EEDEWVNVKK HVRQRSLPCE ASECVAVLPG DLILCFQEGK DQALYFDAIV LDAQRRRHDV  240
RGCRCRFLVR YSHDQSEQEI VPLRKICRRP ETDYRLQQLH NAASEAGNSD RHPRSTPETA  300
TKATITEPKA SVLSDATEQV QPSSSGVAIT AAAGGSTQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-461402714134SHH1 SAWADEE
4iur_B7e-461402714134SHH1 SAWADEE
4iut_A7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-461402714134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542297.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A178V9T00.0A0A178V9T0_ARATH; SHH2
STRINGXP_010542297.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding