PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542422.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 517aa MW: 56071.3 Da PI: 8.4447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_010542422.1 105 FICEICSKGFQRDQNLQLHRRGH 127 89*******************88 PP
2	zf-C2H2	11.8	0.00074	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_010542422.1 182 WKCDKCSKRYAVQSDWKAHSKIC 204 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.1E-5	104	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.73E-8	104	127	No hit	No description
SMART	SM00355	0.047	105	127	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	105	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
SMART	SM00355	87	147	177	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.0E-4	170	203	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.73E-8	177	202	No hit	No description
SMART	SM00355	140	182	202	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MMMMNKDMLF HHQQQQQQQQ VIAEENMSNL TSASGDQASV SSGNRSEASG SNFVINPQQQ 60 QYFVLQPEAQ TSQPPKKKRN QPGNPDPDAE VIALSPGTLQ ARNRFICEIC SKGFQRDQNL 120 QLHRRGHNLP WKLKQRSKTE AIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFSRKHGEK 180 RWKCDKCSKR YAVQSDWKAH SKICGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESVRS 240 IQTQQPNTPL IQSPRHQTPP NNASSSSSSQ NLISLHIQSL GSYGARNNGS SSSSTCSNNN 300 NPHAFPMKKE QQSDVNQIMI PHWLSPSNPN PNPSGCGFFP FGSATATAAC FHHPSPPSPA 360 MSATALLQKA AQMGATNSAP SPTDVVRSSH NLTTTMASMM TSSATPPPGF GFAGGNSDNP 420 SMFQDYNSMD SAAGFGRGEA FEESFGGFLG TSAAAGVAVP VAGEKNGGGG VGEGLTRDFL 480 GLRPLYHSDI LSFAGLGDCL DGNASEEHSH SQNLWQS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MMMMNKDMLF HHQQQQQQQQ VIAEENMSNL TSASGDQASV SSGNRSEASG SNFVINPQQQ  60
QYFVLQPEAQ TSQPPKKKRN QPGNPDPDAE VIALSPGTLQ ARNRFICEIC SKGFQRDQNL  120
QLHRRGHNLP WKLKQRSKTE AIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFSRKHGEK  180
RWKCDKCSKR YAVQSDWKAH SKICGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESVRS  240
IQTQQPNTPL IQSPRHQTPP NNASSSSSSQ NLISLHIQSL GSYGARNNGS SSSSTCSNNN  300
NPHAFPMKKE QQSDVNQIMI PHWLSPSNPN PNPSGCGFFP FGSATATAAC FHHPSPPSPA  360
MSATALLQKA AQMGATNSAP SPTDVVRSSH NLTTTMASMM TSSATPPPGF GFAGGNSDNP  420
SMFQDYNSMD SAAGFGRGEA FEESFGGFLG TSAAAGVAVP VAGEKNGGGG VGEGLTRDFL  480
GLRPLYHSDI LSFAGLGDCL DGNASEEHSH SQNLWQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-32	178	239	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-32	178	239	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	144	KQRSKTEAIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542422.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542422.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_010542423.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X2
Refseq	XP_019058303.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q8H1F5	1e-157	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1J3FCK1	0.0	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRING	XP_010542422.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-129	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]