PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542470.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 253aa    MW: 28465.2 Da    PI: 5.5749
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.2e-07107150441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       C+ +e+ e++  C +++  lC++C ++ H        H++v+
  XP_010542470.1 107 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 150
                     57*****************************5578888898876 PP
2zf-B_box223.3e-07162198438
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                     + C+ ++e     fC +++ llC++C  ++Hk   H+
  XP_010542470.1 162 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 198
                     78******99********************9545675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-11104151IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58104151IPR000315B-box-type zinc finger
CDDcd000211.09E-5107151No hitNo description
PROSITE profilePS501199.001159203IPR000315B-box-type zinc finger
SMARTSM003361.8E-9159202IPR000315B-box-type zinc finger
PfamPF006431.4E-5162198IPR000315B-box-type zinc finger
CDDcd000216.68E-7162201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCSRELVNVL ASAAILLWSN YFITRRSGGL FFRPINAFWA ELLGELRDEN FQDFAAWEGN  60
GEFERTMLQN SSLLTFQGSF LVLLLINVQS HLPYTSRRTQ TNPEMKIQCE VCEKAEAEVL  120
CCSDEAVLCK SCDEKVHTAN KLFQRHNRVT LLKHNSTSSG IPLCDICQER TGYVFCLEDR  180
ALLCKNCDGA IHKCTSHQRF LASGVHVSLQ SCIEDSECST SLSSSIFQIH PSGESEAGNS  240
EVDLEKERHE GNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542470.20.0PREDICTED: B-box zinc finger protein 23 isoform X3
SwissprotO826173e-59BBX23_ARATH; B-box zinc finger protein 23
TrEMBLD7LY291e-59D7LY29_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010542458.11e-174(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.14e-55DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]