PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542484.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 246aa    MW: 27241.1 Da    PI: 8.8063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-0964110354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riN  +++Lr +l  +      K +Ka+ L k+v+ +k+L
  XP_010542484.1  64 RNHKEAERRRRERINCHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 110
                     58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.02461110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1164118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-764110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1165119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-867116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEQESGYSDK VLYSFLAGND VVIGGGDHTS TTMQSFCGSS SYYPLAISGV GETMAQDRAL  60
TALRNHKEAE RRRRERINCH LNKLRNVLSC NSKTDKATLL AKVVQRVKEL KQETLEISRT  120
ETLPSEADEV SVLHFGDYCS NDGRIIFKAS LCCEDRSDLL PDLMDMLKSL QMKTLRAEMA  180
TLGGRTRSVL VVAAGKEHGV ESVHFLQNAL KSLLERSSKP LMERSGGAGG GDRSKRRRAL  240
DRIIMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542484.10.0PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-116BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0D3BP101e-123A0A0D3BP10_BRAOL; Uncharacterized protein
TrEMBLA0A3N6S4301e-123A0A3N6S430_BRACR; Uncharacterized protein
TrEMBLA0A3P6BSZ91e-123A0A3P6BSZ9_BRAOL; Uncharacterized protein
STRINGXP_010542484.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]