PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542577.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 296aa    MW: 31852.4 Da    PI: 7.8159
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_010542577.1 130 YECKTCNRTFPSFQALGGHRASH 152
                     99**********99999998887 PP
2zf-C2H213.30.00025203225123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_010542577.1 203 HECSICGSEFTSGQALGGHMRRH 225
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.61E-9129152No hitNo description
PfamPF139124.0E-13129154IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575130157IPR007087Zinc finger, C2H2
SMARTSM003550.052130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576678.61E-9198225No hitNo description
Gene3DG3DSA:3.30.160.600.001201225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11202226IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868203230IPR007087Zinc finger, C2H2
SMARTSM003550.019203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDAHDEFRTD RTHYIIKGKR TKRQRSYLPF VPSAAAATVT TVTSTSSSAG GGGGGALSDE  60
NGSAVSSPVT STIFSSAMAD CTEEEEDMAI CLIMLARGAG PPPVEKIGKP EKIHKNSEKT  120
HHENSGFHVY ECKTCNRTFP SFQALGGHRA SHKRPRTDEK TKSPLEKAKP RPSEEGQNCQ  180
TKIAGENSAP PENNNSNKPN KVHECSICGS EFTSGQALGG HMRRHRTATS AGEGGNNPVV  240
ASRGNTEVTG NVDRLIEPRK YLPLDLNLPA PEDDLRESKF QGLVLSATPA LVDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542577.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542577.10.0PREDICTED: zinc finger protein ZAT5
SwissprotQ681X41e-104ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLD7LIE11e-106D7LIE1_ARALL; Uncharacterized protein
STRINGXP_010542577.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]