PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542595.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YC

Protein Properties

Length: 210aa MW: 23844.4 Da PI: 5.5507

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	42.5	1.4e-13	106	192	13	99
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i++ ++ + i+ +a l+ ka e+fi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ XP_010542595.1 106 VEDAKLCRFPMNRIRRIMRIENVNSHITQDAVFLVNKATEMFIERFSEDAYDCSIQDKKKFIHYKHLSSVVSNEERYEFLSDYVPEK 192 67888899************99**********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.04E-19	113	191	IPR009072	Histone-fold
Pfam	PF00808	4.0E-18	113	176	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.1E-23	114	191	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MASSKKRKKD DKEKEKPRSN GATNMKANKK QNKVNGGGAA AVEEQEVYEI SENSTGESEE 60 IERGEKIQKS NGRSKSRNGK SVGIPKTRRK DDDDDDEEEE DGGGGVEDAK LCRFPMNRIR 120 RIMRIENVNS HITQDAVFLV NKATEMFIER FSEDAYDCSI QDKKKFIHYK HLSSVVSNEE 180 RYEFLSDYVP EKLKAEDALE QWKAAVTDAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	8	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542595.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542595.1	1e-153	PREDICTED: DNA polymerase epsilon subunit C
TrEMBL	Q0WP19	6e-66	Q0WP19_ARATH; Uncharacterized protein At1g07980
STRING	XP_010542595.1	1e-152	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-52	nuclear factor Y, subunit C10