PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542601.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 241aa    MW: 26484.6 Da    PI: 4.7629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.7e-39471471100
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk+lrr+C++d Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++++da++s+vyeA+ar+rdPvyG++g i +lq+q+ +l+a++
  XP_010542601.1  47 PCAACKILRRRCVADkCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQKTDAVNSMVYEARARIRDPVYGSAGSIYHLQRQVIELRAQI 141
                     7***********9777******************************************************************************* PP

          DUF260  95 allkee 100
                     a+++ e
  XP_010542601.1 142 AEAQVE 147
                     998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.92346148IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3847145IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLRTEISGGT CTASTSVAAS AAVTAASSPS PQSQPQTQTQ TQVVASPCAA CKILRRRCVA  60
DKCVLAPYFP PTEPTKFTIA HRVFGASNII KFLQELPESQ KTDAVNSMVY EARARIRDPV  120
YGSAGSIYHL QRQVIELRAQ IAEAQVEIMN MQHQRSNLLA LLVCKTDRPN TASPDQQQGQ  180
NNLSNLEPSS FESGDELMSS SPRDDEIDDL GFLEDYNSNN SMDDINTTSS MPWWDHPLWS  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37451509113LOB family transfactor Ramosa2.1
5ly0_B1e-37451509113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542601.10.0PREDICTED: LOB domain-containing protein 1
SwissprotQ9SK083e-87LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A291LQZ01e-86A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBLA0A397ZLR91e-86A0A397ZLR9_BRACM; Uncharacterized protein
STRINGXP_010542601.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.16e-83LOB domain-containing protein 11