PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542641.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 628aa MW: 71226.8 Da PI: 6.2375

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	351.4	1.4e-107	248	625	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 ++lLl cA+ +s+gd+ lL ++++ +s gd+ qRla++f+++L+arl++++s++ + s +s+k+ ++ l a++++ ++P++++ XP_010542641.1 248 RTLLLLCAQTISAGDKGSGLDLLRQIRQKSSAIGDSSQRLAHCFANGLEARLHGTTSSVTPTYYGSLASKKKmtAADILEAYRVYLSACPFITLI 342 689*************************************************9999998885555544444499*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 ++ N++Il+ ++ +Hi+Df+i +G+QWp ++q +++++ gp +lRiTg++ p+ g +e+++etg+rLa++++++gvpfefn++++++++ XP_010542641.1 343 YFFSNRMILDVAKDVPVLHIVDFGILYGFQWPMFIQYITNKKCGPSKLRITGIELPQGGfrPAEKIQETGRRLAEYCKRFGVPFEFNAIASQNWD 437 *****************************************************9999************************999* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L+++p+E+laVn+ l+ ++l de++ e+ +rd+vL+l+++++P++++++ + n++ F +rf +al +ysalfd+++++lpre++e XP_010542641.1 438 TIRIEDLKLRPNETLAVNCGLRFKNLQDETAGEENcPRDAVLRLIRRMNPDIFTHSIINGAFNAPFFTTRFKQALFHYSALFDMFDSTLPRENRE 532 *****************************999999****************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r+ +Ere+ gre++nv+acegaer+er et+++W+ r+++aGF++ p++ + ++ ++ l++ + + + v+e+++++++gWk+r L++ S+W XP_010542641.1 533 RMRLEREFYGREAMNVIACEGAERVERPETYKQWQVRMGRAGFRQKPVEAELVECFRRKLERWGyHKDFVVDEDNNWFLQGWKGRILYASSCW 625 ***********************************************************99999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.931	221	605	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-105	248	625	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MEESIGDQPS MFYDSLALQQ TEQMLQQVIS DSRAQSFIPH GSLASMGSDD LWRCDSSSSF 60 DAGCSADAVG VSDRPGDSEF ESCIVFPGST NMLGDGLIGN EILVRSMFSD ADSVLQFNKG 120 LEEAKKFLPG SEKMFPARDR ERNEGAFGMV RVKEETGSDV LRVRKTQEWK ELDLEEESRS 180 CKLSASNVEE DGNVTEMFDK VLLLDAKFDP PTVIESEKAS DGSGGRGEKP RGKKEGRRKK 240 RNETVDFRTL LLLCAQTISA GDKGSGLDLL RQIRQKSSAI GDSSQRLAHC FANGLEARLH 300 GTTSSVTPTY YGSLASKKKM TAADILEAYR VYLSACPFIT LIYFFSNRMI LDVAKDVPVL 360 HIVDFGILYG FQWPMFIQYI TNKKCGPSKL RITGIELPQG GFRPAEKIQE TGRRLAEYCK 420 RFGVPFEFNA IASQNWDTIR IEDLKLRPNE TLAVNCGLRF KNLQDETAGE ENCPRDAVLR 480 LIRRMNPDIF THSIINGAFN APFFTTRFKQ ALFHYSALFD MFDSTLPREN RERMRLEREF 540 YGREAMNVIA CEGAERVERP ETYKQWQVRM GRAGFRQKPV EAELVECFRR KLERWGYHKD 600 FVVDEDNNWF LQGWKGRILY ASSCWVPL

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MEESIGDQPS MFYDSLALQQ TEQMLQQVIS DSRAQSFIPH GSLASMGSDD LWRCDSSSSF  60
DAGCSADAVG VSDRPGDSEF ESCIVFPGST NMLGDGLIGN EILVRSMFSD ADSVLQFNKG  120
LEEAKKFLPG SEKMFPARDR ERNEGAFGMV RVKEETGSDV LRVRKTQEWK ELDLEEESRS  180
CKLSASNVEE DGNVTEMFDK VLLLDAKFDP PTVIESEKAS DGSGGRGEKP RGKKEGRRKK  240
RNETVDFRTL LLLCAQTISA GDKGSGLDLL RQIRQKSSAI GDSSQRLAHC FANGLEARLH  300
GTTSSVTPTY YGSLASKKKM TAADILEAYR VYLSACPFIT LIYFFSNRMI LDVAKDVPVL  360
HIVDFGILYG FQWPMFIQYI TNKKCGPSKL RITGIELPQG GFRPAEKIQE TGRRLAEYCK  420
RFGVPFEFNA IASQNWDTIR IEDLKLRPNE TLAVNCGLRF KNLQDETAGE ENCPRDAVLR  480
LIRRMNPDIF THSIINGAFN APFFTTRFKQ ALFHYSALFD MFDSTLPREN RERMRLEREF  540
YGREAMNVIA CEGAERVERP ETYKQWQVRM GRAGFRQKPV EAELVECFRR KLERWGYHKD  600
FVVDEDNNWF LQGWKGRILY ASSCWVPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-43	251	625	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	239	KPRGKKEGRRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542641.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542642.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	P0C884	0.0	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	V4NWZ8	0.0	V4NWZ8_EUTSA; Uncharacterized protein
STRING	XP_010542642.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	0.0	GRAS family protein