PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542739.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 230aa MW: 25848.6 Da PI: 5.0149

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.8e-19	82	131	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+taeeAa a+++a+ +l+g XP_010542739.1 82 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAAFALKG 131 9*****.******44465..********************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.314	81	139	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-37	81	145	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.41E-23	81	141	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.8E-30	81	140	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-11	82	93	IPR001471	AP2/ERF domain
CDD	cd00018	1.47E-29	82	140	No hit	No description
Pfam	PF00847	2.6E-13	82	131	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-11	105	121	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MESTLFSIYE SQNFSHESSS SPSGSWSSQE SSPFFWNDEF FDPTSEFFFP TPNCYYEENL 60 ANEEEVATIK GEVSNSKGEK AYRGVRRRPW GKYAAEIRDS TRNGIRVWLG TFDTAEEAAL 120 AYDQAAFALK GVSAILNFPV EVVRESLQNM KNVNFNDGGS PVMALKRKHS LRNRPRGKKR 180 SSSSSSPSSP PPSSSIRQRM IKQEFTDSTL VILEDLGADY LEELLMSSCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-28	82	141	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542739.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542739.1	1e-170	PREDICTED: ethylene-responsive transcription factor 15-like
Swissprot	Q8VYM0	7e-73	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A078K115	1e-72	A0A078K115_BRANA; BnaAnng40920D protein
TrEMBL	A0A3P6A496	1e-72	A0A3P6A496_BRACM; Uncharacterized protein
TrEMBL	V4MGN1	2e-72	V4MGN1_EUTSA; Uncharacterized protein
STRING	XP_010542739.1	1e-169	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3990	18	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	2e-61	ethylene-responsive element binding factor 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]